Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01374 ATGGGTTGTTTTCTAAGTAAAGACAAAGATTCAGAACCAGAACACAACAATGGTTATAGATATGTTGAATCTTCTGGTCTTAGGAACAACTATCATGAACAACAACAAGTCAACCAAACAAGAACACCACAACCTAGTACTTCTTCATATCAACCTCAAATACCATTGAAACCTTCATCTATTTCAGCACCAAGTCCAAAACCAGTTATTAAACAAGACACAAACACAATCCTAGGAAAAGGTTTTGAAGATGTGAAACAATTTTACACACTTGGTAAAGAATTGGGTAGAGGTCAATTTGGAGTAACATATCTATGTACTGAGAATTCAACAAAATTGCTTTATGCTTGTAAGTCAATTTCAAAGAGGAAACTTGTGAGTAAATCTGATAGAGAAGATATAAAAAGAGAGATTCAGATTATGCAACATTTAAGTGGTCAACCAAATATTGTTGAATTTAAAGGAGCTTATGAAGATAGAAATTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGACATTATAGTGAAAAAGCAGCTGCTTCTATATGTAGACAGATTGTTAATGTTGTTCATATTTGTCATTTTATGGGTGTTATGCATAGGGATCTCAAGCCAGAGAATTTCTTGTTGTCTAGTAAAGATGAAAATGCACTTCTTAAAGCAACTGATTTTGGTTTGTCTGTTTTTATTGAAGAAGGAAAGGTGTACCGTGATATAGTTGGAAGTGCTTATTATGTTGCTCCAGAAGTTCTTCGTCGCAGATGCGGAAAAGAAATCGATATATGGAGTGCAGGAGTAATACTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATATTTGACGCCATATTGGAAGGTCACATTGATTTTGACAGTGATCCGTGGCCTAAAATATCGGACAGCGCCAAGGATCTTGTTCGTAAAATGCTTATACAGGATCCGAAGAAACGCATAACTTCCGCACAGGTTCTAGAGCATCCATGGATTAAGGATGGAAATGCTTCTGATAAGCCAATAGACAGCGCAGTTCTTTCTAGAATGAAGCAATTCAGAGCTATGAATAAGCTAAAGAAACTTGCATTGAAGGTCATTGCTGAGAATATGTCTGAAGAAGAGATCCGAGGTTTGAAAGCGATGTTTACAAATATGGACACAGACAACAGTGGTACAATCACCTATGAAGAACTAAAAGCAGGATTGCAAAGACTAGGCTCAAAGCTATCAGAAGCCGAAGTTAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGATTGCATTGAATTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACCATCTTTACAAGGCCTTCCAATATTTCGATAAAGACAGCAGTGGGTTTATTACAAGAGATGAACTGGAAACTGCCATGAAAGAATATGGTATGGGAGATGACGCCACAATCAAAGAAATTATATCGGAAGTCGATACAATTATTTCTGAAGTGGACACAGATCATGATGGTAGAATCAACTATGAAGAATTCTGTGCTATGATGAGGAGTGGAAACCAACAACAAGTTAAGCTATTCTAA 1632 0.3676 MGCFLSKDKDSEPEHNNGYRYVESSGLRNNYHEQQQVNQTRTPQPSTSSYQPQIPLKPSSISAPSPKPVIKQDTNTILGKGFEDVKQFYTLGKELGRGQFGVTYLCTENSTKLLYACKSISKRKLVSKSDREDIKREIQIMQHLSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFDSDPWPKISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSEEEIRGLKAMFTNMDTDNSGTITYEELKAGLQRLGSKLSEAEVKQLMEAADVDGNGTIDCIEFITATMHRHKLERDDHLYKAFQYFDKDSSGFITRDELETAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFCAMMRSGNQQQVKLF 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01374 543 Gene3D Transferase(Phosphotransferase) domain 1 175 354 - -
Trre5g01374 543 FunFam Calcium-dependent protein kinase 1 91 174 - -
Trre5g01374 543 SUPERFAMILY EF-hand 370 534 IPR011992 -
Trre5g01374 543 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Trre5g01374 543 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Trre5g01374 543 MobiDBLite consensus disorder prediction 1 68 - -
Trre5g01374 543 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01374 543 CDD STKc_CAMK 88 346 - -
Trre5g01374 543 MobiDBLite consensus disorder prediction 22 68 - -
Trre5g01374 543 SMART efh_1 393 421 IPR002048 GO:0005509
Trre5g01374 543 SMART efh_1 465 493 IPR002048 GO:0005509
Trre5g01374 543 SMART efh_1 507 535 IPR002048 GO:0005509
Trre5g01374 543 SMART efh_1 429 457 IPR002048 GO:0005509
Trre5g01374 543 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01374 543 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Trre5g01374 543 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Trre5g01374 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 528 - -
Trre5g01374 543 ProSiteProfiles EF-hand calcium-binding domain profile. 503 538 IPR002048 GO:0005509
Trre5g01374 543 Gene3D - 355 539 - -
Trre5g01374 543 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01374 543 FunFam calcium-dependent protein kinase 1 175 354 - -
Trre5g01374 543 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Trre5g01374 543 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Trre5g01374 543 CDD EFh 468 533 IPR002048 GO:0005509
Trre5g01374 543 SUPERFAMILY Protein kinase-like (PK-like) 88 367 IPR011009 -
Trre5g01374 543 Coils Coil 411 431 - -
Trre5g01374 543 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Trre5g01374 543 ProSitePatterns EF-hand calcium-binding domain. 516 528 IPR018247 -
Trre5g01374 543 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Trre5g01374 543 Pfam EF-hand domain pair 464 533 IPR002048 GO:0005509
Trre5g01374 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Trre5g01374 543 FunFam Calcium-dependent protein kinase 1 354 536 - -
Trre5g01374 543 Gene3D Phosphorylase Kinase; domain 1 91 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01374 Trre-Chr5 9634107 9638265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01374 3 543 EF-hand Containing Proteins AT3G20410 73.477 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre5g01374 Pkinase 4.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01374 K13412 - gmx:547888 924.08