Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01370 ATGTGTGTTTGGATTATTGCTGATTGTGTTCCATGTGATTTATTGAATTATGGTTCCAAATCAGTTGTGAAGTATCCTCGATGCAATATCAGGAGGCAATCAACTTATGCTGATGCCGAGGAAGATCTATCTATAGTTTTTACATTGGCAAGTACATGGGCCCAGTTTTTTGCATTTGGCAGTTCAGCATGTGGTTGGCCAATGTTTTACACCATCAATTTAGCTTATCAAAATGCAACGAATTTAGGATTATCATATGGTAGCCATGCATCAGAACTAAAGCCTCTTTTCATGGCAATCGGTTTTATCATAGGATATCCAGTTGTTTCAGCTTCAGTTAAAGTACTTCATGGCTTGTGGAGAAATGACTTAGCAGCACTAAAGGGTTCATGTCCAAATTGTGGAGAAGAGGTATTTGCATTTGTAAAAATGGACAAGACTAACTACTCACCCCATAGAGCAAAGTGCCATGTGTGTGAATGCTTATTGGAATTTTGCACTGAAGTCGAGCAATCCACTTCAAGATTTGGTAGACAATGGGTTTATGAAAGGTCAAATGTGAGCATTGGGAAACAGTGGAAGGAGTTTCTTGATTATAATGAAACCATTGGCTTTATATTTCATGATGATGCGAAGAAGCTTGACAGAGCTGCTAAAAACAAATATGTTGTATGA 675 0.3793 MCVWIIADCVPCDLLNYGSKSVVKYPRCNIRRQSTYADAEEDLSIVFTLASTWAQFFAFGSSACGWPMFYTINLAYQNATNLGLSYGSHASELKPLFMAIGFIIGYPVVSASVKVLHGLWRNDLAALKGSCPNCGEEVFAFVKMDKTNYSPHRAKCHVCECLLEFCTEVEQSTSRFGRQWVYERSNVSIGKQWKEFLDYNETIGFIFHDDAKKLDRAAKNKYVV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01370 224 PANTHER PGR5-LIKE PROTEIN 1B, CHLOROPLASTIC 10 186 IPR039987 GO:0009535|GO:0009773|GO:0016730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01370 Trre-Chr5 9599327 9604989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01370 115 224 Eukaryotic Initiation Factors Gene Family AT1G29590 38.182 9.00e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01370 - - adu:107461661 254.218