Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01360 ATGGGAGAAATACATAGTGAAGTAACATGGGAGAAGGAGGAGGAAGAAAAAGAAGAAGAACAAGCTCAAGTAGACATATGGAAATACATATTTGGTTTTGTAGAGCTTTCAGTGGTGAAATGTGCAATTGAACTTGGCATAGCTGATGTTATTGAAAAACACAAAAAACCCATGTCACTAATAGAGTTATCAACAATTATAAAATGTGACCCTTCATATCTTAACCGCATCATGAGATTCCTAGTACATAGAAAAATATTTAAAACCATACAATACAACCATGATACCTATCCTAGTTATGTCCAAACACCGCTTTCTCGCCGTTTGATTCGAAACGGCGAGAAAAGCATGTCTGCTCTTCTTTTACTGGAGAGCAGTCATGTAATGGTAGCACCTTGGCTTAGTTTAAGTGGTCGTGTTTTGATTAATGGTAATCCTTCTTTTGAGAAGGTTCATGGTGAAGATTTGTGGCGTTATGCTGCTTCAAATCTTGATCATAATAATCTTTTTAATGATGCTATGGCTTGTGATGCTAAAGTTGTTGTGCCAGCTATTGTTGAAGGTTGTAGTGAGATTTTTGATGGTGTTGAATCCTTGGTGGATGTTGGTGGAGGGAATGGTACCACCATGAGTATTCTTGTTAAGGCTTTTCCTTGGATTCAAGGAATTAATTTTGATCTTCCTCATGTCATCGATGTGGCACCAAAGTATGATAAGGTGGAACATGTGGCAGGTGACATGTTTACAAGTGTTCCCAAAGCTGATGCTGTAATTATCAAGTGGATTTTACATGATTGGGGGGATGATGAGTGCATCCAAATCTTGAAGAAATGTATGGAAGCTATTCCAAGAGAAAAAGGAAAAGTTATTATTGTGGAAGCAGTTATTGAAGAAGAAGAAGGAGGAAAAAGAGATGTAGGATTAATGTTAGATATGGTGATGATGGCACACACTACCATTGGAAAAGAAAGGACACTACAAGAATGGGACTATGTTATCAAAATGGCTGGATTCAAGGCATTCACCGTGATATCTATCAATGCTGTTCAGTGTGTAATTTTAGCCTCATGCTAA 1074 0.3762 MGEIHSEVTWEKEEEEKEEEQAQVDIWKYIFGFVELSVVKCAIELGIADVIEKHKKPMSLIELSTIIKCDPSYLNRIMRFLVHRKIFKTIQYNHDTYPSYVQTPLSRRLIRNGEKSMSALLLLESSHVMVAPWLSLSGRVLINGNPSFEKVHGEDLWRYAASNLDHNNLFNDAMACDAKVVVPAIVEGCSEIFDGVESLVDVGGGNGTTMSILVKAFPWIQGINFDLPHVIDVAPKYDKVEHVAGDMFTSVPKADAVIIKWILHDWGDDECIQILKKCMEAIPREKGKVIIVEAVIEEEEGGKRDVGLMLDMVMMAHTTIGKERTLQEWDYVIKMAGFKAFTVISINAVQCVILASC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01360 357 FunFam O-methyltransferase family protein 111 356 - -
Trre5g01360 357 Pfam Dimerisation domain 38 82 IPR012967 GO:0046983
Trre5g01360 357 PIRSF O-mtase 5 357 IPR016461 GO:0008168
Trre5g01360 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 353 IPR029063 -
Trre5g01360 357 Gene3D - 8 109 IPR036388 -
Trre5g01360 357 PANTHER O-METHYLTRANSFERASE 36 338 IPR016461 GO:0008168
Trre5g01360 357 FunFam O-methyltransferase family protein 10 109 - -
Trre5g01360 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 357 IPR016461 GO:0008168
Trre5g01360 357 Pfam O-methyltransferase domain 134 339 IPR001077 GO:0008171
Trre5g01360 357 Gene3D Vaccinia Virus protein VP39 110 354 IPR029063 -
Trre5g01360 357 SUPERFAMILY "Winged helix" DNA-binding domain 16 113 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01360 Trre-Chr5 9516570 9524474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01360 38 344 Monolignol Biosynthesis Gene Families AT5G54160 35.962 1.16e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01360 K22588 - gmx:100782951 439.884