Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01357 ATGGAACACATGAACAATATTGAAGTGAATGATGAAAATAGATTGTTTTGTATGATGGAAAAAGGCAGTGGTGGTGGTGGTTGCGGTAGCGGAGGTGGCGGTGACGAGGTAAGTTTGAAAAAGGGTCCTTGGACAACAGCTGAGGATGCAATTTTGATAGATTATGTGACAAAACACGGTGAAGGGAATTGGAATGCAGTTCAAAGAAATACGGGTTTGAATCGTTGTGGCAAGAGTTGTAGGCTTAGATGGGCTAATCATTTAAGGCCCAATTTAAAAAAAGGTGCATTTTCTCCTGATGAAGAGAAACTCATTGTTGAATTACATGCTCAGTTTGGGAATAAATGGGCTAGAATGGCTGCTTTGTTACCTGGAAGAACGGACAACGAAATAAAAAATTACTGGAACACAAGGATCAAACGTCGTCAAAGGCAAGGTCTTCCTCTATATTCAGACGAACACGATTGCGCAAACACACCAACCACGCCAATAACACCTTCACCATGTGTCACCCCAAATGGATCAAACCCTCACAACATTACAACAAAATTTGAGTTTTTCAATCAAAACCACCACCAATATCAATATCAACACCACCCCCACCTTCCATTATCTCCAACATCAACCCATCATCATTCTCCTCTATCTTCACCACTAACACATAGACAACAACATCAACAACAAAATCCTTATTCTCCTCACACTTTCTTAGACACTTCACCCGCAACATTGTCATCTTCTTCACCACTCTCTTTCACTTTCCAAAGACCTGCGCCACTCTTATCGACCCCTCTTCGCTTCAAACGATTTCGTGCGACTCCAAACTTCAGCCTTCAAGTCCCTAATTCCATGACACAACATTGCTCCTCCTCACTCCATGATCCTTCATTAACCTCACTCCATGATAGTAGTTTTAGGTTCCCAACTCATTACAACTCGAGTTTCCCTCAATACTTTCACACTCCTTTGTTGGAATCCGATCGAGGAGTTTCTTCTTCTTCGTCTTTACCTTTCTCAACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGACTCTCCTCAGAACAAGATATAAAGGCTAATAATATTGAGTTCAATAATGATCCTAATTCTTTTCAAAACAATAATAGTGGCTTGATGGGAGATCTTTTAATGGATGCACAAACATTGGCATGTGGACAAAATTCAAAGAAAAGAAGTTACTTGAGCTTAAATGAAGGAAATGATATGTATAATGGATGTCAAAGTTATGATGATTTCCCACTTAGCTCTATTTATTGGTCTTCTAATTCAGAACAAAAACCAAAAGAAGAAGAAGCACCAGACCTAACCAAATTCATGAATGATGATATGTCAACAATGCTAACTGTGATGCCTTCTTCCACAATGCAAAATCAAGATGGGAATAATAATACCAATGGATTAGATCAAGTCTCTAATGTTCAATCTTCTAGTGGTGTGAATATGGCAGATGAAAATTTTGGACTTGATATTAAACCTATAGCTTCATTGTTTCCTCTCACAAACACAACAGATCAGAATAATGAAAATAATGATTGCTACACTTGGGATAATTTACCTGGACTATGTTAA 1593 0.3854 MEHMNNIEVNDENRLFCMMEKGSGGGGCGSGGGGDEVSLKKGPWTTAEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPDEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDCANTPTTPITPSPCVTPNGSNPHNITTKFEFFNQNHHQYQYQHHPHLPLSPTSTHHHSPLSSPLTHRQQHQQQNPYSPHTFLDTSPATLSSSSPLSFTFQRPAPLLSTPLRFKRFRATPNFSLQVPNSMTQHCSSSLHDPSLTSLHDSSFRFPTHYNSSFPQYFHTPLLESDRGVSSSSSLPFSTKLELPSNQYSRLSSEQDIKANNIEFNNDPNSFQNNNSGLMGDLLMDAQTLACGQNSKKRSYLSLNEGNDMYNGCQSYDDFPLSSIYWSSNSEQKPKEEEAPDLTKFMNDDMSTMLTVMPSSTMQNQDGNNNTNGLDQVSNVQSSSGVNMADENFGLDIKPIASLFPLTNTTDQNNENNDCYTWDNLPGLC 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01357 530 SMART sant 93 141 IPR001005 -
Trre5g01357 530 SMART sant 40 90 IPR001005 -
Trre5g01357 530 FunFam Transcription factor GAMYB 96 142 - -
Trre5g01357 530 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Trre5g01357 530 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Trre5g01357 530 Gene3D - 96 201 - -
Trre5g01357 530 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Trre5g01357 530 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Trre5g01357 530 CDD SANT 43 88 IPR001005 -
Trre5g01357 530 CDD SANT 96 137 IPR001005 -
Trre5g01357 530 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 88 IPR017930 -
Trre5g01357 530 MobiDBLite consensus disorder prediction 195 242 - -
Trre5g01357 530 Gene3D - 40 93 - -
Trre5g01357 530 SUPERFAMILY Homeodomain-like 38 135 IPR009057 -
Trre5g01357 530 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Trre5g01357 530 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 21 478 - -
Trre5g01357 530 FunFam MYB-related transcription factor 40 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01357 Trre-Chr5 9497326 9499931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01357 25 530 MYB Transcription Factor Family AT4G26930 35.039 8.94e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g01357 Myb_DNA-binding 5.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01357 - - lja:Lj6g3v0869180.1 612.453