Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01356 ATGGAACACATGAACAATATTGATAATGGAATGAGCGATGAAAATGGGTTGTTTGGTATGATGGAAAGAGGAGGCGACGGTGATGGAGAAGGTAGTGGTGCTAGAGGCGGTGGTGATGAGGTGAGTTTGAAAAAGGGTCCTTGGACAACAGCTGAGGATGCAATTTTGATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAAGAATACAGGTTTGAATCGTTGTGGGAAGAGTTGTAGGCTTAGATGGACTAATCATTTGAAGCCCAATTTGAAAAAAGGCGCATTTTCTCCGGATGAAGAGAAACTCATTGTTGAACTTCATGCTCAATTTGGGAATAAATGGGCTAGAATGGCTACTTTGTTGCCTGGGAGAACAGACAATGAAATAAAGAATTACTGGAACACAAGAATTAAACGTCGTCAAAGACTAGGACTTCCTCTATATTCAGACGAACATGATCGTACTATTACACCGGCCACATCAACAACACCTTCACCATGTGTCACTCCAAATGGATCAAACCCTAACAACATTACATCAAAATTTGAGTTTATCAATCAAAACCCCCACCAATATCAACAACAACACATTCCTTTATCTCCAACATCAGCTCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGACAACAACATTCTTATTCTCCTCACACTTTCTTAGACACTTCACCTACACCATTGTCATCTTCTTCACCACTCTCATTCACTTTCCAAAGACCCACACCACTCTTGTCATCCCCGTATCGCTTCAAACGCTACCGCTCAACTCCAAACTTCAACCTTCAAGTCCCTAATTCCATGTCACAAAATTGCTCCTCTTCACTTCATGATCTTTCTTTAACTTCTTATCATGATAGTAATTTCAAGTTCCCAATTCATTACAACTCGAGTTTTTCGCAATACTTTCATACTCCATCGTTGGAACCCGATCGAGGACTCTCTTCTTCTTCGACTTCGCATTTCTCAACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGACTATCCACAGAACAAGATATTAAGGCTAATAATATTGAGTTTAATAATGATCCTAATTCTTTTCAAAACAATAATAGTGGCTTGATGGGAGATCTTTTAATGGATACACAAACATTGGCATGTGGACAAAATTCAAAGAAAAGAAGTTACTTGAGCTTAAATGAAGGAAATGACATGTTTAATGGATGTCAAAGTTATGATGACTTTCCATTTAGCTCTGTTTATTGGTCTTCTAATTCAGGACAAAAATCGATAGAAGAAGCACCAGATCTAACCAAATTCATGAATGATGACATATCAACAATGCTAAGTGTGATGCCTTCTTCCACAATACAAAACCAAGATTGGAATAACAATGGATCAGATCAAGTTTCTAATGTTCAATATTCTAGTGGTGTGAATATGGCGGATGAAAATGTTGAACTTGATATTAAGCCTATAGCTTCATTGTTTCCTCTCACAAACACAACAGACGAAAATAATGAAAATAATGGTTGCTACACTTGGGACAATTTAATTTACTAA 1569 0.3767 MEHMNNIDNGMSDENGLFGMMERGGDGDGEGSGARGGGDEVSLKKGPWTTAEDAILIDYVTKHGEGNWNAVQKNTGLNRCGKSCRLRWTNHLKPNLKKGAFSPDEEKLIVELHAQFGNKWARMATLLPGRTDNEIKNYWNTRIKRRQRLGLPLYSDEHDRTITPATSTTPSPCVTPNGSNPNNITSKFEFINQNPHQYQQQHIPLSPTSAHHHSPLSSPLQHRQQHSYSPHTFLDTSPTPLSSSSPLSFTFQRPTPLLSSPYRFKRYRSTPNFNLQVPNSMSQNCSSSLHDLSLTSYHDSNFKFPIHYNSSFSQYFHTPSLEPDRGLSSSSTSHFSTKLELPSNQYSRLSTEQDIKANNIEFNNDPNSFQNNNSGLMGDLLMDTQTLACGQNSKKRSYLSLNEGNDMFNGCQSYDDFPFSSVYWSSNSGQKSIEEAPDLTKFMNDDISTMLSVMPSSTIQNQDWNNNGSDQVSNVQYSSGVNMADENVELDIKPIASLFPLTNTTDENNENNGCYTWDNLIY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01356 522 MobiDBLite consensus disorder prediction 160 249 - -
Trre5g01356 522 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Trre5g01356 522 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Trre5g01356 522 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Trre5g01356 522 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Trre5g01356 522 SUPERFAMILY Homeodomain-like 42 139 IPR009057 -
Trre5g01356 522 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Trre5g01356 522 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Trre5g01356 522 CDD SANT 47 92 IPR001005 -
Trre5g01356 522 Gene3D - 44 97 - -
Trre5g01356 522 FunFam MYB-related transcription factor 44 97 - -
Trre5g01356 522 CDD SANT 100 141 IPR001005 -
Trre5g01356 522 FunFam Transcription factor GAMYB 100 146 - -
Trre5g01356 522 Gene3D - 100 146 - -
Trre5g01356 522 MobiDBLite consensus disorder prediction 1 45 - -
Trre5g01356 522 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 476 - -
Trre5g01356 522 SMART sant 97 145 IPR001005 -
Trre5g01356 522 SMART sant 44 94 IPR001005 -
Trre5g01356 522 MobiDBLite consensus disorder prediction 159 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01356 Trre-Chr5 9492468 9495015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01356 27 157 MYB Transcription Factor Family AT5G06100 76.336 3.40e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g01356 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01356 - - lja:Lj6g3v0869180.1 609.757