Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01345 ATGAATAAGATTTTTGTTTGGTATCATCGGTTTGTCGTGTTCTTGTTGCTTACAAGGGTTTCTTTAACCTCATCACTTCCACATACTGATAATGGCCATGTAGATTCAGATTCTGCAAGAAATCTGATTCAGGAGCAGGGTGATGATCATCAAATACATTGCTCTAGAGAAAGAAGTAGAGTAGCTTGGAAGATAATTCAAGAGTATTTGACGCCATTTGTGGAGAAAGAAAAATATAATATCTCAAGAAAGTGCAGGCTTCACCCTGACAATGATATATATAGAGATCAGGAACAACATAAATCTCATATAGATATAAATGAATGGAAGTGTGGATACTGTAAGAAAACTTTCTATGAAGAGAAGAATCTTGATCTGCATTTTGACAACAGACACTCCAATTTACTTAATTTGAATGAAAGCCAATGCTTAGCAGATATATGTGGAGCACTGCATTGTGACCATGAGATTAATTCCGGATCAAAAAAATCAAAGTGCAATCCTGCTGCTGCAGCAAGAAATAAACATTTGTGTGAGACCTTAGCCGATAGCTGTTTTCCTGTTAGCCATGGTCCTGCAGCGAGCCGGCTTCATGAATTCTTCTTGCATCAATTCTGTAATGCTCACAGCTGCACGGGGAGTAAGCCTTTCTCCAGAGGGCGCAGGAAAAAGACAAATGTGTTCTACATAGTTGCCTCCATTTTACTTGTGACACTGCTGTTACTTTACTATCTCTACATGTATTTATATCAGAGAGGATTGAAAAGGGAAACTCAAATGCTGAAGCGTATATCACAAGCCGGTCGAAAAAAGAAGCCATATTAA 825 0.3818 MNKIFVWYHRFVVFLLLTRVSLTSSLPHTDNGHVDSDSARNLIQEQGDDHQIHCSRERSRVAWKIIQEYLTPFVEKEKYNISRKCRLHPDNDIYRDQEQHKSHIDINEWKCGYCKKTFYEEKNLDLHFDNRHSNLLNLNESQCLADICGALHCDHEINSGSKKSKCNPAAAARNKHLCETLADSCFPVSHGPAASRLHEFFLHQFCNAHSCTGSKPFSRGRRKKTNVFYIVASILLVTLLLLYYLYMYLYQRGLKRETQMLKRISQAGRKKKPY 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01345 274 PANTHER ZINC FINGER PROTEIN-RELATED 12 273 - -
Trre5g01345 274 ProSitePatterns Zinc finger C2H2 type domain signature. 111 132 IPR013087 -
Trre5g01345 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 134 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01345 Trre-Chr5 9438161 9441884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01345 32 273 C2H2 Transcription Factor Family AT5G63280 60.569 2.13e-105 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01345 - - lang:109338698 439.113