Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01331 ATGGCTAAATTGCCCCAATCTGGTTCCATTTCAATGAACTCTGCATTCGGTGCTGAAAGTGAAAATCCTCATCCTCCTTCTTCTCTCGCTTCTGCTGCGACCTCTCAATCTTCCATTTCCAACAACGATCGTAACATGGCTTCTTCTGAACAACTCGTTCTCGAACTCAGCAACCCTGAGCTCCGTGAAAATGCTCTTCTAGAACTCTCTAAGAAGAGAGAGCAATTCCAAGATCTTGCTCCATTGCTATGGAATTCATTTGGCACTATTGCAGCACTTTTGCAGGAAATAGTGTCAATATACCCTGTATTGTCACCTCCCAATCTCAATCCTGGACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGTGCGTGGCTTCTCATCCTGATACAAGGATGCTATTCCTGAATGCTCATATTCCGCTGTATCTGTATCCCTTCCTGAACACCACAAGTAAGACAAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCATTGGTGAAGGTTGATGATACCGAGGTTATTAGTTTTCTGCTTTCAACTGAAATAATTCCCCTGTGCCTGCGTACCATGGAAATGGGGAGTGAGCTCTCCAAAACTGTCGCAACATTTATTGTCCAAAAGATTCTGTTGGACGATCTGGGCTTGGATTACATTTGTACAACAGCTGAGCGCTTTTTCGCTGTAGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGCCTGTCAGATAACCTAAGGGCCTGTGACGCATTAAGAAGCTGTCTTCCAGACATGTTAAGGGATGCTACTTTTAGCAGCTGCCTTCGTGAGGACCCCACAACGAGGAAGTGGCTGCAACAATTGCTTCACAATGTTGGAGGGAATCGGGTTCCTGCATTACAAGGCGGAGGAGGCTTCGATCATCTAATGGTGAATTGA 993 0.4542 MAKLPQSGSISMNSAFGAESENPHPPSSLASAATSQSSISNNDRNMASSEQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLNPGQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDLGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNLRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLLHNVGGNRVPALQGGGGFDHLMVN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01331 330 PANTHER UNCHARACTERIZED 42 314 IPR007216 GO:0006402|GO:0030014
Trre5g01331 330 Gene3D - 41 311 IPR011989 -
Trre5g01331 330 MobiDBLite consensus disorder prediction 1 42 - -
Trre5g01331 330 FunFam Cell differentiation protein RCD1 42 313 - -
Trre5g01331 330 SUPERFAMILY ARM repeat 54 277 IPR016024 -
Trre5g01331 330 Pfam Cell differentiation family, Rcd1-like 52 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01331 Trre-Chr5 9322014 9327815 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Trre5g01331 Rcd1 1e-129 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01331 K12606 - pop:7483613 556.214