Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01309 ATGGCTGATTTTCAGACCTCTACCCACCGATCCAAGTGGATTTTCTCTCCTCAAAAACTGATTGAGAAATATACAGATGCTAATCAGAGAGCCAAGCAAACCCTAGAGCAGTGTGGAGCAACTCTAATGGAAGTAGATGCTGATGGGTCTTTGACATATCCGGAATCCCAGACGACTGCAAGCAGTAGTGCTGAAAAACATTCTCGGATAAAGCCTCTTAGTATTGAAGAGGAGCAATGTATAAAGGTATTTTATGAAAATAAGCTACAAGAAGTGTGCAACAATTTCCACTTCCCTCATAAGATCCAGGCAACAGCCCTCATATTTTTTAAAAGGTTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAAAATATAATGTTGACATGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCGGCTGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTACCAGAGTCTGGAATTTGATCTTATTGTTTATGCTCCATATCGCTCAGTTGAAGGTTTTACAGATTATATGGAGGAATTTTGCAATGCCGGTGAGGACGAGCTTCAAATGCTCAAGGCTTTGCAAAATACAGCAAGACTGGAAGTTGATAAAATGATGCTTACAGATGCACCACTCTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCACTGCGTACCTCAAATGCTCTCCATAAAGTTCTTGACTTTGATAGTTTTCTGAGCAGAATTTTTTCCCATCAGAATTCTACGCACACAATGGCCGAGCTTCTTGAATCATTGGATGCAATTGAATCTTGGGTTAGAAAATATAGAAGTCCTTCAGAGAAGGAATTGAAGCATATCAACCGGAAACTGAAGTCTTGTTGGGGTCAGAGTTCTCATGACGAGGGAAAGAAGAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAACGAAGCACAAAATGCTTAG 996 0.4046 MADFQTSTHRSKWIFSPQKLIEKYTDANQRAKQTLEQCGATLMEVDADGSLTYPESQTTASSSAEKHSRIKPLSIEEEQCIKVFYENKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFTDYMEEFCNAGEDELQMLKALQNTARLEVDKMMLTDAPLLFPPGQLALAALRTSNALHKVLDFDSFLSRIFSHQNSTHTMAELLESLDAIESWVRKYRSPSEKELKHINRKLKSCWGQSSHDEGKKREKKSKHKSRKSSNEAQNA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01309 331 Gene3D - 177 282 - -
Trre5g01309 331 FunFam cyclin-H1-1 63 175 - -
Trre5g01309 331 CDD CYCLIN_AcCycH_rpt1 3 174 - -
Trre5g01309 331 PANTHER CYCLIN 37 325 IPR043198 GO:0006357|GO:0016538
Trre5g01309 331 Pfam Cyclin C-terminal domain 179 278 IPR031658 -
Trre5g01309 331 SMART cyclin_7 87 168 IPR013763 -
Trre5g01309 331 Gene3D - 63 175 - -
Trre5g01309 331 SUPERFAMILY Cyclin-like 179 305 IPR036915 -
Trre5g01309 331 Pfam Cyclin, N-terminal domain 89 174 IPR006671 -
Trre5g01309 331 MobiDBLite consensus disorder prediction 302 331 - -
Trre5g01309 331 CDD CYCLIN_AcCycH_rpt2 177 301 - -
Trre5g01309 331 FunFam Cyclin h 177 282 - -
Trre5g01309 331 SUPERFAMILY Cyclin-like 65 176 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01309 Trre-Chr5 9146557 9150450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01309 1 280 Core Cell Cycle Gene Families AT5G27620 65.000 4.03e-135 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01309 K06634 - gmx:547736 569.696