Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01308 ATGGCTGATTTTCAGACCTCTACCCACCGATCCAAGTGGATTTTCTCTCCTCAAAAACTGATTGAGAAATATACAGATGCTAATCAGAGAGCCAAGCAAACCCTAGAGCAGTGTGGAGCAACTCTAATGGAAGTAGATGCTGATGGGTCTTTGACATATCCGGAATCCCAGACGACTGCAAGCAGTAGTGCTGAAAAACATTCTCGGATAAAGCCTCTTAGTATTGAAGAGGAGCAATGTATAAAGGTATTTTATGAAAATAAGCTACAAGAAGTGTGCAACAATTTCCACTTCCCTCATAAGATCCAGGCAACAGCCCTCATATTTTTTAAAAGGTTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAAAATATAATGTTGACATGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCGGCTGAGGAGCTTGGTAAGGGGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAAGTCTGGAATTTGATCTTATTGTTTATGCTCCATATCGCTCAGTTGAAGGTTTTACAGATTATATGGAGGAATTTTGCAATGCCGGTGAGGACGAGCTTCAAATGCTCAAGGCTTTGCAAAATACAGCAAGACTGGAAGTTGATAAAATGATGCTTACAGATGCACCACTCTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCACTGCGTACCTCAAATGCTCTCCATAAAGTTCTTGACTTTGATAGTTTTCTGAGCAGAATTTTTTCCCATCAGAATTCTACGCACACAATGGCCGAGCTTCTTGAATCATTGGATGCAATTGAATCTTGGGTTAGAAAATATAGAAGTCCTTCAGAGAAGGAATTGAAGCATATCAACCGGAAACTGAAGTCTTGTTGGGGTCAGAGTTCTCATGACGAGGGAAAGAAGAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAACGAAGCACAAAATGCTTAG 987 0.4043 MADFQTSTHRSKWIFSPQKLIEKYTDANQRAKQTLEQCGATLMEVDADGSLTYPESQTTASSSAEKHSRIKPLSIEEEQCIKVFYENKLQEVCNNFHFPHKIQATALIFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMISLEFDLIVYAPYRSVEGFTDYMEEFCNAGEDELQMLKALQNTARLEVDKMMLTDAPLLFPPGQLALAALRTSNALHKVLDFDSFLSRIFSHQNSTHTMAELLESLDAIESWVRKYRSPSEKELKHINRKLKSCWGQSSHDEGKKREKKSKHKSRKSSNEAQNA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01308 328 PANTHER CYCLIN 35 322 IPR043198 GO:0006357|GO:0016538
Trre5g01308 328 Gene3D - 63 172 - -
Trre5g01308 328 SMART cyclin_7 87 168 IPR013763 -
Trre5g01308 328 FunFam cyclin-H1-1 63 172 - -
Trre5g01308 328 Pfam Cyclin C-terminal domain 176 275 IPR031658 -
Trre5g01308 328 CDD CYCLIN_AcCycH_rpt1 3 171 - -
Trre5g01308 328 SUPERFAMILY Cyclin-like 176 302 IPR036915 -
Trre5g01308 328 CDD CYCLIN_AcCycH_rpt2 174 298 - -
Trre5g01308 328 Gene3D - 174 279 - -
Trre5g01308 328 FunFam Cyclin h 174 279 - -
Trre5g01308 328 SUPERFAMILY Cyclin-like 65 173 IPR036915 -
Trre5g01308 328 Pfam Cyclin, N-terminal domain 89 164 IPR006671 -
Trre5g01308 328 MobiDBLite consensus disorder prediction 299 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01308 Trre-Chr5 9146557 9150450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01308 1 277 Core Cell Cycle Gene Families AT5G27620 64.286 9.13e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01308 K06634 - gmx:547736 558.14