Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01304 ATGGAAGATGAAGTCATTTACAATGATATATCTATAGGAAACTCTAATGTTGAAGTTCCACATTCTTCTTCTCAAGTCATGTCATTTAATGGAAAACGACTAATTATGGATCATGAAGTTGATTTCTTTGCTCAGAAGAAAATGAGTCCAGTTCATCATGACCAAAGGATGGAGCATCATCATGTAGATACTAGTAGTACTTTGGATCTTCTCACAAATATTTCTCTTAGCAACAAATCAACAATGGATGATGAAGAATATTCCGAAGCAACGATTAGGAACAAAAATGAGTGTGCTGCGTTGGTAGCTGAATTGCACCAAATGAATGTTGAAAATCAACGTTTGAAAGAGCTGGTTGATAAGCTGAGAATTGATTGCAATGCCCTAGAAGAGCATGTTATGCAGTTGAAGCAAAAACAGTATAAACAAGAGATTAATGATGAAGCAACAGAAGAGAAGAAGAGGAAAATGGTTGACTTGATGGAGTGTGATAAAAAGATTCAAAAGATTTGCAACAATGGAGTTATAAAAGAGAAGAAGATGGAAAGGGATGATAATGAGATTTCACAAGCTATGAAAGCATTTCCAGGGTGGCTCTCAAACAATGTTCCAAGGTTGAATTCTTTCAAGGGTGTTGATGATCAAGGAACTGAATCAATGATTAAAAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAGCTACTATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGAAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGAACTGCTTGTCCAGTTCGGAAACAAGTACAAAGGTGTGCTGAAGATAGAACTATATTGGTACAAACATATGAAGGACAACATAACCATGCATTACCACCAACAGCAAAAGCAATGGCATCAACAACATCAGCAGCAGCATCACTTCTACTTTCGGGACCATTAACAAGTGCAGATGGTTTAATTAATCCAACAATCTTAGAAAGTGCATCAATCCCTGGTTCACATAACATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTATCACATTAGATCTCACTGAAGAGGCTACTAAAAATTCTTCACAACAAAGTCAATTTAATCTCATTCAACCCATTTTAGCTCAGAAGTTTATGTCATCATTAAATGTTTCTGGAATGGAAAATGCTTCGTTTGCTGATACTGTTAGTGCTGCAACAGCTGCTATGACTTCTGATCCAAAATTCACAACTGCTCTTGTTGCTGCCATAACTTCCATCATTGGAAGTAATTCAAATCAAAACAATGATGGTACTACAAATGGTACAAATGGAGATCAGCAAAAAAATAATGCTTAA 1356 0.3658 MEDEVIYNDISIGNSNVEVPHSSSQVMSFNGKRLIMDHEVDFFAQKKMSPVHHDQRMEHHHVDTSSTLDLLTNISLSNKSTMDDEEYSEATIRNKNECAALVAELHQMNVENQRLKELVDKLRIDCNALEEHVMQLKQKQYKQEINDEATEEKKRKMVDLMECDKKIQKICNNGVIKEKKMERDDNEISQAMKAFPGWLSNNVPRLNSFKGVDDQGTESMIKKARVSVRARSEATMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDRTILVQTYEGQHNHALPPTAKAMASTTSAAASLLLSGPLTSADGLINPTILESASIPGSHNMATLSASAPFPTITLDLTEEATKNSSQQSQFNLIQPILAQKFMSSLNVSGMENASFADTVSAATAAMTSDPKFTTALVAAITSIIGSNSNQNNDGTTNGTNGDQQKNNA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01304 451 Gene3D WRKY domain 222 299 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01304 451 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01304 451 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01304 451 FunFam probable WRKY transcription factor 31 222 299 - -
Trre5g01304 451 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01304 451 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 72 437 IPR044810 GO:0003700
Trre5g01304 451 SUPERFAMILY WRKY DNA-binding domain 230 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01304 451 MobiDBLite consensus disorder prediction 429 451 - -
Trre5g01304 451 Coils Coil 98 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01304 Trre-Chr5 9125548 9130274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01304 39 443 WRKY Transcription Factor Family AT1G62300 41.880 1.01e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g01304 WRKY 2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01304 - - cam:101500503 493.426