Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01303 ATGGCTTTCCCTCCTTACCGTCCATCTCACTTCCGTAGCCAAACTTACAACACTCTTGTCCGTATTTTCTCTCATCTCTCTCCTTCCACCGTTCCTCCTCAGCCACTCAATGTTCCTGATAATGGCAAAGTTGGTTCCAATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGAAATACATGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTCAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAACTAATGAACGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCCTTGAACTGTGAGAAACAGAATAGCGGTAGTGAAATTGATTTGATGGATTACCGAGTAGAAGAACATGTTGAATTTCTGCATTCTGGTACAAACACGTCTGAAAGTGCAAGTCAGGTGTTAACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGTTTTCTTGTGTTAGAGTCAACAAAGGAACGAGCTTCCGATTCTGTAATTAGTACATCAAGTATAGAGAATGAAAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTGATAAGGTTGTTGAAGAAACTCACAGTTCTTTAGATCCTGATTTGAATATTGAAGCAATGAATATGGCAAAAGATGGAGGGTTACTGGATTCAACAGTTATGAAAAATAAATCCGAAACAGAAAATGAAGAGAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCCGATATTTTGATTGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATAGATGGAAACACTTTTGATGTGTCTTCCCCGGATGATATCGTTTCAGAACAGATGAAAGTGGATGAAATTCAGAAACCTGTGAATTCATTTGGAAACACGATATCTCCTTTCAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTCATGGTAGATTCCAATAGCAATGGACAAGTACAATCTAGGACTATCAATGCCATACCAACAAATTCAACCCAAAATCAAGTCTTGCACAAAGGATTTTTGGAAGAAACTGCTATCAAAGATCACGGGAACTCGTCTGCAGTACAGCAGATGGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGGAAGTGATTGATACCAATAGAAAACGAAAATATGTTCCTGATTCTGAGGAGAAGGAAGATGAAAATAAGCAGATTGTTGATGCCAGCAGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAATTAGAAAGAAGAAGAAGTTTCGAAAGAACAGAGAACTAGGTGTTAAAAGGATGAAGTTGATTCCAGTACAAAAACCGAAAATTATTCCAATTTGTCGCCATTATATGAAAGGAAGGTGCCATGAGCCTGACAAGTGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGGTGATTGCCCATTTGATCATCAACTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGAAATACTTACGCCTACAAATGCTTGCAAACCAAAGTTGGAGTCTCCTCTTTCATTAGGAAATACAAATTTCAGTACCCCACTGAATAGTCATGGCAATAGTTCTGTCCAGCAAAACCACTCCACCAATTCTAAGGGAATTCATTCTCACACTAATGTAGAACATAAGGTGACAAAGCCAACATCAGCACCCAAAGGAATTAGATTCATAAATGTTGCCAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGTCAGCAATGAGACGTGTGCAGATAAAAGTCAAAATACTGTGGAAGTTCCTAAGAAATTACCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGCAGAAGTTCTGTTTGTGGTTTTCAAAGTTCTATTCAATCCACTGCAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACACTCAATTTCATCTCTGAATAAGGTTGATTATGGAAAAGCCAGTGACAGAACTGCAGAAAATTTACCACGAACTGCGTTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATAAAATCAAAGTTTCTAGGGAAAGATTCAACCGATGATTCAGTGAGGGATCACGACCATTGTAAATCAGTTCTAGAGGGAAAACAGGCATCCGATAATTCTCAGACTTCAACTATGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2676 0.398 MAFPPYRPSHFRSQTYNTLVRIFSHLSPSTVPPQPLNVPDNGKVGSNVKDPKGPVPLEEIHDTIGSVGDKDKDFSATAMVLDDIEFLMGSEEPSTQTNDFQCEQKLMNELELVVKGIEDPVCDNGLIPLNCEKQNSGSEIDLMDYRVEEHVEFLHSGTNTSESASQVLTQVQGELNQLASEGFLVLESTKERASDSVISTSSIENESQQKETELVNPVSPVVVSLPTIQEGEFEKEEQDGDKVVEETHSSLDPDLNIEAMNMAKDGGLLDSTVMKNKSETENEEKSDKLICVRNTTNSSDILIEEGDLEEGEISGDFAIDGNTFDVSSPDDIVSEQMKVDEIQKPVNSFGNTISPFNMGLSFQGFPSNLFMVDSNSNGQVQSRTINAIPTNSTQNQVLHKGFLEETAIKDHGNSSAVQQMVDASRKEQSGPGPKKKKNKKEVIDTNRKRKYVPDSEEKEDENKQIVDASRSKRGPGSQEKKIRKKKKFRKNRELGVKRMKLIPVQKPKIIPICRHYMKGRCHEPDKCNFSHDTVPSTKSKPCVHFARHSCMKGGDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQEILTPTNACKPKLESPLSLGNTNFSTPLNSHGNSSVQQNHSTNSKGIHSHTNVEHKVTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVVSNETCADKSQNTVEVPKKLPAVTPKGINFLSFGRSSVCGFQSSIQSTAEGKILKLPQSVNFGLSEHSISSLNKVDYGKASDRTAENLPRTALFSHDILDKNQSMADRIKSKFLGKDSTDDSVRDHDHCKSVLEGKQASDNSQTSTMTSATLLARPFASQQSSDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGASPV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01303 891 MobiDBLite consensus disorder prediction 413 492 - -
Trre5g01303 891 MobiDBLite consensus disorder prediction 477 492 - -
Trre5g01303 891 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 232 889 IPR045124 GO:0003723|GO:0045892
Trre5g01303 891 MobiDBLite consensus disorder prediction 612 690 - -
Trre5g01303 891 MobiDBLite consensus disorder prediction 428 476 - -
Trre5g01303 891 Gene3D - 472 535 - -
Trre5g01303 891 ProSiteProfiles Zinc finger C3H1-type profile. 507 534 IPR000571 GO:0046872
Trre5g01303 891 Gene3D - 536 600 - -
Trre5g01303 891 ProSiteProfiles Zinc finger C3H1-type profile. 566 589 IPR000571 GO:0046872
Trre5g01303 891 SMART c3hfinal6 508 533 IPR000571 GO:0046872
Trre5g01303 891 SMART c3hfinal6 564 588 IPR000571 GO:0046872
Trre5g01303 891 SMART c3hfinal6 536 562 IPR000571 GO:0046872
Trre5g01303 891 SUPERFAMILY CCCH zinc finger 508 532 IPR036855 GO:0046872
Trre5g01303 891 MobiDBLite consensus disorder prediction 664 690 - -
Trre5g01303 891 ProSiteProfiles Zinc finger C3H1-type profile. 536 563 IPR000571 GO:0046872
Trre5g01303 891 MobiDBLite consensus disorder prediction 612 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01303 Trre-Chr5 9117488 9123226 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g01303 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01303 - - tpra:123918975 1459.51