Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01302 ATGGCTTTCCCTCCTTACCGTCCATCTCACTTCCGTAGCCAAACTTACAACACTCTTGTCCGTATTTTCTCTCATCTCTCTCCTTCCACCGTTCCTCCTCAGCCACTCAATGTTCCTGATAATGGCAAAGTTGGTTCCAATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGAAATACATGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTCAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAACTAATGAACGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCCTTGAACTGTGAGAAACAGAATAGCGGTAGTGAAATTGATTTGATGGATTACCGAGTAGAAGAACATGTTGAATTTCTGCATTCTGGTACAAACACGTCTGAAAGTGCAAGTCAGGTGTTAACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGTTTTCTTGTGTTAGAGTCAACAAAGGAACGAGCTTCCGATTCTGTAATTAGTACATCAAGTATAGAGAATGAAAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTGATAAGGTTGTTGAAGAAACTCACAGTTCTTTAGATCCTGATTTGAATATTGAAGCAATGAATATGGCAAAAGATGGAGGGTTACTGGATTCAACAGTTATGAAAAATAAATCCGAAACAGAAAATGAAGAGAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCCGATATTTTGATTGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATAGATGGAAACACTTTTGATGTGTCTTCCCCGGATGATATCGTTTCAGAACAGATGAAAGTGGATGAAATTCAGAAACCTGTGAATTCATTTGGAAACACGATATCTCCTTTCAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTCATGGTAGATTCCAATAGCAATGGACAAGTACAATCTAGGACTATCAATGCCATACCAACAAATTCAACCCAAAATCAAGTCTTGCACAAAGGATTTTTGGAAGAAACTGCTATCAAAGATCACGGGAACTCGTCTGCAGTACAGCAGATGGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGCAGATTGTTGATGCCAGCAGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAATTAGAAAGAAGAAGAAGTTTCGAAAGAACAGAGAACTAGGTGTTAAAAGGATGAAGTTGATTCCAGTACAAAAACCGAAAATTATTCCAATTTGTCGCCATTATATGAAAGGAAGGTGCCATGAGCCTGACAAGTGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGGTGATTGCCCATTTGATCATCAACTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGAAATACTTACGCCTACAAATGCTTGCAAACCAAAGTTGGAGTCTCCTCTTTCATTAGGAAATACAAATTTCAGTACCCCACTGAATAGTCATGGCAATAGTTCTGTCCAGCAAAACCACTCCACCAATTCTAAGGGAATTCATTCTCACACTAATGTAGAACATAAGGTGACAAAGCCAACATCAGCACCCAAAGGAATTAGATTCATAAATGTTGCCAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGTCAGCAATGAGACGTGTGCAGATAAAAGTCAAAATACTGTGGAAGTTCCTAAGAAATTACCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGCAGAAGTTCTGTTTGTGGTTTTCAAAGTTCTATTCAATCCACTGCAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACACTCAATTTCATCTCTGAATAAGGTTGATTATGGAAAAGCCAGTGACAGAACTGCAGAAAATTTACCACGAACTGCGTTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATAAAATCAAAGTTTCTAGGGAAAGATTCAACCGATGATTCAGTGAGGGATCACGACCATTGTAAATCAGTTCTAGAGGGAAAACAGGCATCCGATAATTCTCAGACTTCAACTATGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2607 0.3997 MAFPPYRPSHFRSQTYNTLVRIFSHLSPSTVPPQPLNVPDNGKVGSNVKDPKGPVPLEEIHDTIGSVGDKDKDFSATAMVLDDIEFLMGSEEPSTQTNDFQCEQKLMNELELVVKGIEDPVCDNGLIPLNCEKQNSGSEIDLMDYRVEEHVEFLHSGTNTSESASQVLTQVQGELNQLASEGFLVLESTKERASDSVISTSSIENESQQKETELVNPVSPVVVSLPTIQEGEFEKEEQDGDKVVEETHSSLDPDLNIEAMNMAKDGGLLDSTVMKNKSETENEEKSDKLICVRNTTNSSDILIEEGDLEEGEISGDFAIDGNTFDVSSPDDIVSEQMKVDEIQKPVNSFGNTISPFNMGLSFQGFPSNLFMVDSNSNGQVQSRTINAIPTNSTQNQVLHKGFLEETAIKDHGNSSAVQQMVDASRKEQSGPGPKKKKNKKQIVDASRSKRGPGSQEKKIRKKKKFRKNRELGVKRMKLIPVQKPKIIPICRHYMKGRCHEPDKCNFSHDTVPSTKSKPCVHFARHSCMKGGDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQEILTPTNACKPKLESPLSLGNTNFSTPLNSHGNSSVQQNHSTNSKGIHSHTNVEHKVTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVVSNETCADKSQNTVEVPKKLPAVTPKGINFLSFGRSSVCGFQSSIQSTAEGKILKLPQSVNFGLSEHSISSLNKVDYGKASDRTAENLPRTALFSHDILDKNQSMADRIKSKFLGKDSTDDSVRDHDHCKSVLEGKQASDNSQTSTMTSATLLARPFASQQSSDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGASPV 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01302 868 Gene3D - 453 513 - -
Trre5g01302 868 ProSiteProfiles Zinc finger C3H1-type profile. 484 511 IPR000571 GO:0046872
Trre5g01302 868 MobiDBLite consensus disorder prediction 413 470 - -
Trre5g01302 868 SMART c3hfinal6 485 510 IPR000571 GO:0046872
Trre5g01302 868 SMART c3hfinal6 541 565 IPR000571 GO:0046872
Trre5g01302 868 SMART c3hfinal6 513 539 IPR000571 GO:0046872
Trre5g01302 868 SUPERFAMILY CCCH zinc finger 485 509 IPR036855 GO:0046872
Trre5g01302 868 ProSiteProfiles Zinc finger C3H1-type profile. 543 566 IPR000571 GO:0046872
Trre5g01302 868 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 232 866 IPR045124 GO:0003723|GO:0045892
Trre5g01302 868 ProSiteProfiles Zinc finger C3H1-type profile. 513 540 IPR000571 GO:0046872
Trre5g01302 868 MobiDBLite consensus disorder prediction 589 617 - -
Trre5g01302 868 Gene3D - 514 577 - -
Trre5g01302 868 MobiDBLite consensus disorder prediction 454 470 - -
Trre5g01302 868 MobiDBLite consensus disorder prediction 641 667 - -
Trre5g01302 868 MobiDBLite consensus disorder prediction 589 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01302 Trre-Chr5 9117488 9123226 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g01302 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01302 - - tpra:123918975 1418.68