Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01301 ATGGCTTTCCCTCCTTACCGTCCATCTCACTTCCGTAGCCAAACTTACAACACTCTTGTCCGTATTTTCTCTCATCTCTCTCCTTCCACCGTTCCTCCTCAGCCACTCAATGTTCCTGATAATGGCAAAGTTGGTTCCAATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGAAATACATGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTCAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAACTAATGAACGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCCTTGAACTGTGAGAAACAGAATAGCGGTAGTGAAATTGATTTGATGGATTACCGAGTAGAAGAACATGTTGAATTTCTGCATTCTGGTACAAACACGTCTGAAAGTGCAAGTCAGGTGTTAACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGTTTTCTTGTGTTAGAGTCAACAAAGGAACGAGCTTCCGATTCTGTAATTAGTACATCAAGTATAGAGAATGAAAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTGATAAGGTTGTTGAAGAAACTCACAGTTCTTTAGATCCTGATTTGAATATTGAAGCAATGAATATGGCAAAAGATGGAGGGTTACTGGATTCAACAGTTATGAAAAATAAATCCGAAACAGAAAATGAAGAGAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCCGATATTTTGATTGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATAGATGGAAACACTTTTGATGTGTCTTCCCCGGATGATATCGTTTCAGAACAGATGAAAGTGGATGAAATTCAGAAACCTGTGAATTCATTTGGAAACACGATATCTCCTTTCAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTCATGGTAGATTCCAATAGCAATGGACAAGTACAATCTAGGACTATCAATGCCATACCAACAAATTCAACCCAAAATCAAGTCTTGCACAAAGGATTTTTGGAAGAAACTGCTATCAAAGATCACGGGAACTCGTCTGCAGTACAGATGGTTGATGCCAGCAGAAAGGAACAAAGTGGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGGAAGTGATTGATACCAATAGAAAACGAAAATATGTTCCTGATTCTGAGGAGAAGGAAGATGAAAATAAGCAGATTGTTGATGCCAGCAGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAATTAGAAAGAAGAAGAAGTTTCGAAAGAACAGAGAACTAGGTGTTAAAAGGATGAAGTTGATTCCAGTACAAAAACCGAAAATTATTCCAATTTGTCGCCATTATATGAAAGGAAGGTGCCATGAGCCTGACAAGTGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGGTGATTGCCCATTTGATCATCAACTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGAAATACTTACGCCTACAAATGCTTGCAAACCAAAGTTGGAGTCTCCTCTTTCATTAGGAAATACAAATTTCAGTACCCCACTGAATAGTCATGGCAATAGTTCTGTCCAGCAAAACCACTCCACCAATTCTAAGGGAATTCATTCTCACACTAATGTAGAACATAAGGTGACAAAGCCAACATCAGCACCCAAAGGAATTAGATTCATAAATGTTGCCAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGTCAGCAATGAGACGTGTGCAGATAAAAGTCAAAATACTGTGGAAGTTCCTAAGAAATTACCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGCAGAAGTTCTGTTTGTGGTTTTCAAAGTTCTATTCAATCCACTGCAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACACTCAATTTCATCTCTGAATAAGGTTGATTATGGAAAAGCCAGTGACAGAACTGCAGAAAATTTACCACGAACTGCGTTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATAAAATCAAAGTTTCTAGGGAAAGATTCAACCGATGATTCAGTGAGGGATCACGACCATTGTAAATCAGTTCTAGAGGGAAAACAGGCATCCGATAATTCTCAGACTTCAACTATGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAATGCCCTACTGGTGCTTCACCTGTATGA 2673 0.3977 MAFPPYRPSHFRSQTYNTLVRIFSHLSPSTVPPQPLNVPDNGKVGSNVKDPKGPVPLEEIHDTIGSVGDKDKDFSATAMVLDDIEFLMGSEEPSTQTNDFQCEQKLMNELELVVKGIEDPVCDNGLIPLNCEKQNSGSEIDLMDYRVEEHVEFLHSGTNTSESASQVLTQVQGELNQLASEGFLVLESTKERASDSVISTSSIENESQQKETELVNPVSPVVVSLPTIQEGEFEKEEQDGDKVVEETHSSLDPDLNIEAMNMAKDGGLLDSTVMKNKSETENEEKSDKLICVRNTTNSSDILIEEGDLEEGEISGDFAIDGNTFDVSSPDDIVSEQMKVDEIQKPVNSFGNTISPFNMGLSFQGFPSNLFMVDSNSNGQVQSRTINAIPTNSTQNQVLHKGFLEETAIKDHGNSSAVQMVDASRKEQSGPGPKKKKNKKEVIDTNRKRKYVPDSEEKEDENKQIVDASRSKRGPGSQEKKIRKKKKFRKNRELGVKRMKLIPVQKPKIIPICRHYMKGRCHEPDKCNFSHDTVPSTKSKPCVHFARHSCMKGGDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQEILTPTNACKPKLESPLSLGNTNFSTPLNSHGNSSVQQNHSTNSKGIHSHTNVEHKVTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVVSNETCADKSQNTVEVPKKLPAVTPKGINFLSFGRSSVCGFQSSIQSTAEGKILKLPQSVNFGLSEHSISSLNKVDYGKASDRTAENLPRTALFSHDILDKNQSMADRIKSKFLGKDSTDDSVRDHDHCKSVLEGKQASDNSQTSTMTSATLLARPFASQQSSDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGASPV 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01301 890 MobiDBLite consensus disorder prediction 427 475 - -
Trre5g01301 890 ProSiteProfiles Zinc finger C3H1-type profile. 506 533 IPR000571 GO:0046872
Trre5g01301 890 MobiDBLite consensus disorder prediction 611 639 - -
Trre5g01301 890 MobiDBLite consensus disorder prediction 663 689 - -
Trre5g01301 890 Gene3D - 535 599 - -
Trre5g01301 890 MobiDBLite consensus disorder prediction 611 689 - -
Trre5g01301 890 Gene3D - 471 534 - -
Trre5g01301 890 ProSiteProfiles Zinc finger C3H1-type profile. 565 588 IPR000571 GO:0046872
Trre5g01301 890 MobiDBLite consensus disorder prediction 409 490 - -
Trre5g01301 890 MobiDBLite consensus disorder prediction 476 490 - -
Trre5g01301 890 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 232 888 IPR045124 GO:0003723|GO:0045892
Trre5g01301 890 ProSiteProfiles Zinc finger C3H1-type profile. 535 562 IPR000571 GO:0046872
Trre5g01301 890 SUPERFAMILY CCCH zinc finger 507 531 IPR036855 GO:0046872
Trre5g01301 890 SMART c3hfinal6 507 532 IPR000571 GO:0046872
Trre5g01301 890 SMART c3hfinal6 535 561 IPR000571 GO:0046872
Trre5g01301 890 SMART c3hfinal6 563 587 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01301 Trre-Chr5 9117488 9123226 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g01301 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01301 - - tpra:123918975 1457.2