Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01292 ATGGGTCGTGGAGGTGGCACAACCGCCGCGGCGGCGGCAGCGGCGGCTGAACCGGGTTTTTTCAAAGAGCCAAGATACAGAGGCGTTAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAGATCAGAGATCCTTTGAAGAAAGCAAGAGTTTGGCTCGGAACATTTGACACGGCGGAAGAGGCGGCGCGTGCATATGATACCGCCGCGAGAAGTCTCCGGGGACCTAAAGCAAAAACAAATTTTCCTCTTGCACAGCCTTTTTACCATAATATTGATGCCGGAGATCCGTTTTCCGATCAACGTTTCTACGCCGGCGCCGGAGTTGTCGCCGGCGATGGGTTTCAAGATCATCGGAGACCTACATCAAGTGGGATGAGCAGCACCGTTGAATCCTTCAGCGGTCCACGTCCGATCGGATTACCGGCACCACCGTCGATCGTCGCCGGAAGAAGGTACCCTCGTACACCGCCGGTTGCTCCAGAGGATTGCCGTAGTGACTGTGATTCTTCGTCGTCGGTTGTTGACGACGGTGACGGTGACAACGTGGCTTCATCGACGATGATTTCTTTTAAACGTCAACCACTGCCGTTTGATCTGAACGCGCCACCGTTGGATGATGCTGACGTGGCAAACTGTGGTGGTGACGATCTGCACTGCACCCTTCTCTGCCTCTAA 675 0.5541 MGRGGGTTAAAAAAAAEPGFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARSLRGPKAKTNFPLAQPFYHNIDAGDPFSDQRFYAGAGVVAGDGFQDHRRPTSSGMSSTVESFSGPRPIGLPAPPSIVAGRRYPRTPPVAPEDCRSDCDSSSSVVDDGDGDNVASSTMISFKRQPLPFDLNAPPLDDADVANCGGDDLHCTLLCL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01292 224 CDD AP2 24 82 IPR001471 GO:0003700|GO:0006355
Trre5g01292 224 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Trre5g01292 224 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Trre5g01292 224 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Trre5g01292 224 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Trre5g01292 224 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Trre5g01292 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 25 179 - -
Trre5g01292 224 MobiDBLite consensus disorder prediction 119 133 - -
Trre5g01292 224 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Trre5g01292 224 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Trre5g01292 224 MobiDBLite consensus disorder prediction 114 180 - -
Trre5g01292 224 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Trre5g01292 224 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01292 Trre-Chr5 9065653 9066327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01292 2 224 AP2-EREBP Transcription Factor Family AT3G20310 54.065 6.90e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g01292 AP2 3.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01292 K09286 - gmx:100782025 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01292 5 9065653 9066327 Trre5g01292 5 9065653 9066327 ECH