Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01291 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTCGAACTTCAATTGCATGAACAAAAAGACTCTCTTTCTGCCATCGATCATGCTCTCCTCATTGATCCAACCAATTCCGAACTCCTTGAGGTTCACGAGGAACTTGTTCAGGCTATTAAGGATGCCGAGGACGGACTTCTTCACCTAAAGCGTTCAAGATTATTATCTGAAGCAGACTCATTGCTGCCTAGTACTAATATTTTTGCTGAAGAAGAGAAAGTGGAGCCAATTGATTCTGCAGATGTTGAACCAGAGCCGCTAGAGGAAAAATGCTATTCTGTTGGATCTACGTGTAGATTCCGTTACAAAGATGGGCGTTGGTACAATGGTCAAGTGCTGCAATCGGATAATTCAGTGGCAAAGATTTCATTTCTAACTCCTACATCTGAGAATATGATGATTTGCAAGTTCTTTTTACAACAGCGATGTCGATTTGGTAGTAACTGTCGCCAATCCCATGGGGTTGATGTTCCACTATCCTCCCTTAAGGAATATGTCCCAACAATCTGGAAACCATCCCTTGCAGGGTCAAGTATATGGGCGGTCTCAAATGCAAATCCAGGAATTTGGAGAGAAGCTGAGCTTGAGTCATGGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACGATGGAAGTTCTATGAAGCTTGGTGCACAAGATATAGTATTATCTGAGTATGCAGATGTGAGTGACATAGATAGTGATTCCAGCTTAGAACAATCCGATTTCAGCGGCTCAGAGGAAGAGGAACCTCAGGGTTTAGGATTTATGGATAGTACCAACTTACAGAAAGGCGTTCAAACTGAAACTGCGATATTTGCAAAGTGGGAGAACCATACGAGAGGCATGGCTTCCAAAATGATGGCTAATATGGGTTACCAAGAAGGAATGGGTTTAGGTTTAACTGGACAGGGCATGCTTGATCCCATAACAGTGAAGGTCCTACCACCAAAACAGTCCTTAGATCATGCACTTAAGTCTCATAAAATGGAAGAGAACACCCAGAATAAACGGAAGAAACGTACCAGAGGTGGCAGGAGGAAACGCGAGAAGAAATTTGCTGAAGCAATTCGTGCTGCAAAAGAAGAAGAAGAATCGGCACCAGATGTCTTTGCACTAATAAACAATCAGCTAGCAATGCATGGTGAAGCTTCCAGTGAGGGATCAAAGAAGAAGCAACAAAGTAAAGGTTTAGCGGAAGGTAAAACGGTAAATAGGAAGGTGTTGGTTGCTTATGAGAACGATGTGAAGGATCTGAAAATTCAGGTTCTAAAGTTTGAACAAATGGCGGAAGCAAACAAGAAAGAAAAACCTGTTTATGACGCCGCTATGAAAAAATTAGTCCAAACCCGCAAGGCTTTGGCTGAGGCGGAAGCAGTTCACGCTTCTGCCTCAAATGATGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1485 0.4269 MGSEEERVLENQLELQLHEQKDSLSAIDHALLIDPTNSELLEVHEELVQAIKDAEDGLLHLKRSRLLSEADSLLPSTNIFAEEEKVEPIDSADVEPEPLEEKCYSVGSTCRFRYKDGRWYNGQVLQSDNSVAKISFLTPTSENMMICKFFLQQRCRFGSNCRQSHGVDVPLSSLKEYVPTIWKPSLAGSSIWAVSNANPGIWREAELESWDEKAGVGQVVFRDDGSSMKLGAQDIVLSEYADVSDIDSDSSLEQSDFSGSEEEEPQGLGFMDSTNLQKGVQTETAIFAKWENHTRGMASKMMANMGYQEGMGLGLTGQGMLDPITVKVLPPKQSLDHALKSHKMEENTQNKRKKRTRGGRRKREKKFAEAIRAAKEEEESAPDVFALINNQLAMHGEASSEGSKKKQQSKGLAEGKTVNRKVLVAYENDVKDLKIQVLKFEQMAEANKKEKPVYDAAMKKLVQTRKALAEAEAVHASASNDVVSKEKEKRWLKF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01291 494 Coils Coil 454 488 - -
Trre5g01291 494 MobiDBLite consensus disorder prediction 395 414 - -
Trre5g01291 494 Coils Coil 423 443 - -
Trre5g01291 494 SMART G-patch_5 292 338 IPR000467 GO:0003676
Trre5g01291 494 MobiDBLite consensus disorder prediction 246 275 - -
Trre5g01291 494 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Trre5g01291 494 MobiDBLite consensus disorder prediction 338 365 - -
Trre5g01291 494 Gene3D - 106 178 - -
Trre5g01291 494 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Trre5g01291 494 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Trre5g01291 494 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Trre5g01291 494 MobiDBLite consensus disorder prediction 338 352 - -
Trre5g01291 494 Pfam CCCH-type zinc finger 146 165 IPR041367 -
Trre5g01291 494 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01291 Trre-Chr5 9050476 9055537 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g01291 G-patch 9.6e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01291 - - psat:127084863 748.814