Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01270 ATGATTTCCGAACATAATTCATATCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAAGACAACCTTGCAAATTTGAGGTCAAAGGTTAATCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAACAGGGATAGTTTGCTTGGGCCAGAAATTAAGCCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACAGTATTAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTTAGTCTACACACTAGGCTCATTGATGACTTGGACGAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAAAACTTAGCAGTTTTAAACAAACGCACAAAAGGTGGTTGCTCATGCTTGTGCATGCTATTATCGGTGATTGGTATAGTGGTTTTGGTTGTTGTCATATGGCTTCTGGTCAAATATTTGTAA 618 0.4126 MISEHNSYPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLVKYL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01270 205 FunFam syntaxin-51 isoform X2 111 173 - -
Trre5g01270 205 SUPERFAMILY SNARE fusion complex 100 170 - -
Trre5g01270 205 Gene3D - 110 173 - -
Trre5g01270 205 Pfam SNARE domain 146 197 IPR000727 -
Trre5g01270 205 CDD SNARE_Qc 112 169 - -
Trre5g01270 205 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 109 171 IPR000727 -
Trre5g01270 205 PANTHER SYNTAXIN 21 192 IPR045242 -
Trre5g01270 205 SMART tSNARE_6 104 171 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01270 Trre-Chr5 8877559 8879246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01270 1 205 SNARE and Associated Proteins AT1G16240 73.558 2.63e-108 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01270 K08503 - gmx:100799465 334.339