Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01269 ATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTTGCTGATGATATCACTGGGATGATTTCCGAACATAATTCATATCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCAGACTGGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAAGACAACCTTGCAAATTTGAGGTCAAAGGTTAATCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAACAGGGATAGTTTGCTTGGGCCAGAAATTAAGCCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAATGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACAGTATTAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTTAGTCTACACACTAGGCTCATTGATGACTTGGACGAACATGTAGATGTTACAGATTCTCGGCTGAGGAGAGTGCAGAAAAACTTAGCAGTTTTAAACAAACGCACAAAAGGTGGTTGCTCATGCTTGTGCATGCTATTATCGGTGATTGGTATAGTGGTTTTGGTTGTTGTCATATGGCTTCTGGTCAAATATTTGTAA 690 0.4101 MASSSDSWMKEYNEAMKLADDITGMISEHNSYPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELSLHTRLIDDLDEHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVIGIVVLVVVIWLLVKYL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01269 229 Pfam SNARE domain 170 221 IPR000727 -
Trre5g01269 229 FunFam syntaxin-51 isoform X2 135 197 - -
Trre5g01269 229 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 133 195 IPR000727 -
Trre5g01269 229 Gene3D - 134 197 - -
Trre5g01269 229 CDD SNARE_Qc 136 193 - -
Trre5g01269 229 PANTHER SYNTAXIN 38 216 IPR045242 -
Trre5g01269 229 SUPERFAMILY SNARE fusion complex 124 194 - -
Trre5g01269 229 SMART tSNARE_6 128 195 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01269 Trre-Chr5 8877559 8879318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01269 1 229 SNARE and Associated Proteins AT1G16240 73.276 1.70e-122 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01269 K08503 - gmx:100794038 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01269 5 8877559 8879318 Trre5g01269 5 8877559 8879318 ECH
Trre5g01269 5 8877559 8879318 Trre9g05055 9 56267340 56268875 PCT