Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01251 ATGGACAAAGCAACCTTACTAGCAGAAGTAATTAGGCAAGTAAAGGAATTGAAAAGTAATGCTAATCAAGCAAGCAATGGTTATTTAATCCCAATAGATGGTAATGAAGTGAAAGTTGAATCTTGTGAAAAGGGTGTAGTAGATGGATCAATTCTTTACAAAGCATCTATCTGTTGTGATTACCAACCAAAACTTCTTTCTGAACTAAAACAAACTCTTGATACCCTTCAACTAAAATTGATAAGGGCAGAATTGTCAACTTTGGGAGACAGGATTAAGAATGAATTTGTCTACAATTGTTGCAAAGTAAACATTTATAATATTGAGCTATGTCAACTTATTGCAAGTAATGTTTACCAGGCACTGAGTCTGAGTTCTGTATTGGATATCATTGTCATTTTTAGAGACTTTATACTCCTCATAATTTTAGGCTATGTTTGA 441 0.3288 MDKATLLAEVIRQVKELKSNANQASNGYLIPIDGNEVKVESCEKGVVDGSILYKASICCDYQPKLLSELKQTLDTLQLKLIRAELSTLGDRIKNEFVYNCCKVNIYNIELCQLIASNVYQALSLSSVLDIIVIFRDFILLIILGYV 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01251 146 Coils Coil 66 86 - -
Trre5g01251 146 Coils Coil 7 27 - -
Trre5g01251 146 PANTHER TRANSCRIPTION FACTOR BHLH30 1 122 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01251 Trre-Chr5 8781275 8781715 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01251 2 94 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.553 7.76e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01251 - - jre:108998403 153.295