Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01238 ATGATAGCTACAAGATTGAATCAAGCAATTTACACATTATTAGTTGTTTGCAATCTCATCATTTCTGGTAGAGGAGTTGACTTCCCTTATGTAACTCGTTTGGTAAATCTCACTTATCTTCATCATGCTGTGAGACAAGGAGCAGTTTGTTTGGATGGAAGCCCGCCTGCATATCAATTTGACAAAGGATTTGGTGATGGGGTCAACAACTGGCTCATCTTTCTTGAGGGAGGAGGATGGTGTGACACAACTGAAGATTGCTTGAATAGAATCTTGCCCACTGGCATGGGTTCTTCGACCAACATGTTTCCAAAGAATTTCACGGGGATGACATCTAATGAACGATCACTTAATCCTTACTTCTACAACTGGAATAGAGTGTATGTTCATTATTGTGACGGATCTTCATTTACCGGTAACAATTTTGACCCTGTTCACAAACTTCATTATAAAGGAGCCAAGATTTTCAATGTAGTTGTAAAAGATTTACTAGCTAAAGGAATGAAGAATGCATCAAATGCACTTCTTTCGGGTTGTTCGGCGGGTGGATTAGCTGCAATCCTGAATTGTGATAAATTCCGGTCTCTCCTTTCTACCAGTACTCGTGTAAAATGTGTTTCTGATGCTGGTTACTTTCCCCACTTGAAAGATGTTTTAGGAGGATTCAGTTTTGCAAAGTACTTCGATAATATTGTCAAACTACATGGTTCTGCTAAGAATTTACCCAAGTCTTGTACATCAAAAATGAAACCAAAAAGTTTGTGCTTTCATCCCCAGTACGCGGTGCGATATGTTGAAACACCTATTTTTATCATAAATTCCGCATATGATACATATCAGATTGCAAACATTTTGGCACCAAACATAACCAATCTGCCTAAATCTTGGGAGACTTGCAGAAGCAACACGACAACATGTTTGACGCCTGATCATGTGGAAACATTGAAAGACTTTAGATTGGGATTTTTAGATGCATTGCCTAAACTAGGTAATAGCTCATTCAGAGGGATGTTCATAAGTTCTTGCCTAATTCACTGTCAATACCATCTTCAACAAACTTGGAATGGGGTTGATCCCCGTTTTCGTCTTCATAACAAGGCAATGTCGGAGGCAGTAGGGAAATGGTTTGATGGTAAGGCTGAACTTCAGAGAATCGATCGTGAAAATGATTTGCCTAGAGTGTGCTTAACTTTGTGA 1197 0.3926 MIATRLNQAIYTLLVVCNLIISGRGVDFPYVTRLVNLTYLHHAVRQGAVCLDGSPPAYQFDKGFGDGVNNWLIFLEGGGWCDTTEDCLNRILPTGMGSSTNMFPKNFTGMTSNERSLNPYFYNWNRVYVHYCDGSSFTGNNFDPVHKLHYKGAKIFNVVVKDLLAKGMKNASNALLSGCSAGGLAAILNCDKFRSLLSTSTRVKCVSDAGYFPHLKDVLGGFSFAKYFDNIVKLHGSAKNLPKSCTSKMKPKSLCFHPQYAVRYVETPIFIINSAYDTYQIANILAPNITNLPKSWETCRSNTTTCLTPDHVETLKDFRLGFLDALPKLGNSSFRGMFISSCLIHCQYHLQQTWNGVDPRFRLHNKAMSEAVGKWFDGKAELQRIDRENDLPRVCLTL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01238 398 PANTHER NOTUM-RELATED 12 388 IPR004963 GO:0016787
Trre5g01238 398 Pfam Pectinacetylesterase 34 378 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01238 Trre-Chr5 8717669 8720353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01238 4 386 Carbohydrate Esterase AT5G45280 47.028 8.27e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01238 K19882 - dcr:108207537 766.918