Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01236 ATGGAGGCAGCGTTAGATCTCTATGACTTCTTTCGTGACGTCGTCGGTTTTACCTATGATGATGAAGCCTACCATGCTGTTCTCGTTACAATTTCCGAGATCGTGATGCCAATGATGGCACGACAGGTGAACGTTGGACATACTCCGGGTGTTCTTGAAGGGGATGCCTTCTCGTACATATGCCAGATGGTATTGGTCGGACTTCATCGATACTGGGTTCGCGGCATATCCGTGGGAATGCACGGTTTTGAGGTAGCGACTTGTTGCGTGGCTATCCTCCCCCTCCATGACTTTCGTGTATCCGACAACACTATCATATATGGCGGCGAAGGGGGGTTTTTAAGGGAAGCAAACCAGCTTCATTTAAGAGTACTAGCAGACCAAGATTGGCTGAGCCGTGGGAATTTTTCCTTATTTGGGTCCATGTTGAATGGAACTGCCGTAAGGTTGGTGGTAAGCAGTGGGATTTGGTTGAACGACCCCATATTCTATTATCTTTATGTCGAATTGTTTAGGGTTTGA 522 0.4732 MEAALDLYDFFRDVVGFTYDDEAYHAVLVTISEIVMPMMARQVNVGHTPGVLEGDAFSYICQMVLVGLHRYWVRGISVGMHGFEVATCCVAILPLHDFRVSDNTIIYGGEGGFLREANQLHLRVLADQDWLSRGNFSLFGSMLNGTAVRLVVSSGIWLNDPIFYYLYVELFRV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01236 173 Pfam SAD/SRA domain 45 154 IPR003105 -
Trre5g01236 173 SUPERFAMILY PUA domain-like 38 167 IPR015947 -
Trre5g01236 173 ProSiteProfiles YDG domain profile. 46 173 IPR003105 -
Trre5g01236 173 Gene3D - 44 173 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01236 Trre-Chr5 8704760 8705281 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01236 45 151 Su(var)3-9 homologs AT1G73100 33.929 1.62e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01236 - K19499 cqi:110732226 69.3218