Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01234 ATGGAGGCAGCATTATATCTCTATGTTTTCTTTCGTGACGTCGTCGATTTTACCTATGATGAAGCCTACCATGTTTTTCTCGTTACAATTCCCGATATCACGGTGCCAATGATGGCACGACAGGTGAACGTTGGACATACTCCGGGTGTTCTTGAAGGGGATGCCTTCTCGTACAGATGCCAGATGGTATTGGTCGGACTTCATCGATACTGGGTTCGCGGCATATCCGTGGGAATGCACGGTTTTGAGGTAGCGACTTGTTGCGTGGCTATCCTCCCCCTCCATGACTTTCGTGTATCCGACAACACTATCATATACGGCGGCGAAGGGGGGTTTTTAAGGGAAGCAAACCAGCTTCATTTAAGAGTACTAGCAGACCAAGATTGGCTGAGCCGTGGGAATTTTTTCTTATTTGGGTCCATGTTGAATGGAACTGCCGTAAGGTTGGTGGTAAGCAGTGGGATTAGGTTGAACGACCCCATATTCTATTATCTTTATGTCGGATTGTTTAGGGTTTAG 519 0.4682 MEAALYLYVFFRDVVDFTYDEAYHVFLVTIPDITVPMMARQVNVGHTPGVLEGDAFSYRCQMVLVGLHRYWVRGISVGMHGFEVATCCVAILPLHDFRVSDNTIIYGGEGGFLREANQLHLRVLADQDWLSRGNFFLFGSMLNGTAVRLVVSSGIRLNDPIFYYLYVGLFRV 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01234 172 SUPERFAMILY PUA domain-like 38 172 IPR015947 -
Trre5g01234 172 ProSiteProfiles YDG domain profile. 45 172 IPR003105 -
Trre5g01234 172 Gene3D - 43 172 IPR036987 -
Trre5g01234 172 SMART G9a_1 40 172 IPR003105 -
Trre5g01234 172 Pfam SAD/SRA domain 44 172 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01234 Trre-Chr5 8701122 8701640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01234 44 172 Su(var)3-9 homologs AT1G73100 32.090 5.08e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01234 - K19499 cqi:110732226 72.7886