Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01233 ATGGAGGCAGCATTATATCTCTATGTTTTCTTTCGTGACGTCGTCGATTTTACCTATGATGAAGCCTACCATGTTTTTCTCGTTACAATTCCCGATATCACGGTGCCAATGATGGCACGACAGGTGAACGTTGGACATACTCCGGGTGTTCTTGAAGGGGATGCCTTCTCGTACAGATGCCAGATGGTATTGGTCGGACTTCATCGATACTGGGTTCGCGGCATATCCGTGGGAATGCACGGTTTTGAGGTAGCGACTTGTTGCGTGGCTATCCTCCCCCTCCATGACTTTCGTGTATCCGACAACACTATCATATACGGCGGCGAAGGGGGGTTTTTAAGGGAAGCAAACCAGCTTCATTTAAGAGTACTAGCAGACCAAGATTGGCTGAGCCGTGGGAATTTTTTCTTATTTGGGTCCATGTTGAATGGAACTGCCGTAAGGTTGGTGGATTGGCGTCTGGTAATAAGTGATAATGGTTTTGTAGTTTACGAATATTATTTGGAGAGAACAGTGGAGTGA 522 0.4636 MEAALYLYVFFRDVVDFTYDEAYHVFLVTIPDITVPMMARQVNVGHTPGVLEGDAFSYRCQMVLVGLHRYWVRGISVGMHGFEVATCCVAILPLHDFRVSDNTIIYGGEGGFLREANQLHLRVLADQDWLSRGNFFLFGSMLNGTAVRLVDWRLVISDNGFVVYEYYLERTVE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01233 173 SUPERFAMILY PUA domain-like 38 170 IPR015947 -
Trre5g01233 173 Pfam SAD/SRA domain 44 151 IPR003105 -
Trre5g01233 173 SMART G9a_1 40 173 IPR003105 -
Trre5g01233 173 Gene3D - 43 153 IPR036987 -
Trre5g01233 173 ProSiteProfiles YDG domain profile. 45 173 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01233 Trre-Chr5 8701050 8701640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01233 44 150 Su(var)3-9 homologs AT1G73100 34.821 2.99e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01233 - K19499 cqi:110732226 71.2478