Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01224 ATGGGTATGATGAGTTTGATGGTTGCACTTAATCATTTTGCAACTAATGAGGAAAAAATTATTGGTCAGGATCATGCAAATGTTGTGTCTTTGACACTCTTTGTTGCTCTTCTATGTCTTTGTTTGTTAATTGGTCACTTGCTTGAAGGAAATCGATGGATTAATGAATCTATTGTCGCCATTTTTATCGGGTTCATTGCGGGCGCGATAATTTTGTTATACACTAAGGGAAAAAGTCCTCACATCCTTGTATTTGATGAAGAATTATTCTTCATATATCTTCTTCCTCCAATAATATTCAATGCAGGATTTCAGGTGAAGAAGAAACGGTTCTTCCACAACTTTTTCACAATCATGTTGTTCGGTGTAATCGGTGTTTTTATTTCAGCTTCTATTATTACAGCCGGCAGCTGGTGGCTCTTCCCCAAGTTGAACTTTCTTGACCTCGACCTGCGAGATTATCTTGCTTTAGGAACAATTTTCTCCTCAACAGACACAGTTTGTACGCTACAGGTTCTCCATCAAGATGATACTCCTTTACTATACAGCCTAGTATTTGGGGAAGGAGTGGTAAACGATGCTACATCGGTAGTACTCTTCAATGCAGTCCAAAAGATTGATATTTCGAAACTTGACGGCCGGTCATTGAGTGTTATTGGTGATTTCTTGTATCTATTCTCAGCAAGTACTGCTCTTGGAGTCATAGCTGGACTTATCACAGCATATATCTTGAAAACCTTAAGCTTTGGAAGACATTCAAGTGTTCGTGAAATCTCAATGATGATATTAATGGCATACCTGTCCTACATGTTGGCAGAGTTATTTGAGCTAAGTGGAATCCTCACTGTTTTCTTTTGTGGAATATCAATGTCACATTATGCATGGCATAATGTGACTGAAACTTCAAGAATCACAACCAGGCATGTGTTTGCAACAATGTCGTTTATTGCAGAAACTTTCATATTTATTTACGTCGGTATGGATGCCCTTGACCTTGAAAAGTGGAACAAGACCGAATTAGGAATTGGAAATTTGATGGGAATTTACAGTGGCTTAATCTTTTTAATATTACTTGGAAGGGCTGCATTTGTTTTCCCCCTCTCTGCACTTGCCAATTATATGAATAGACGCTCTGAACAAACACCGAGTATCACACTCCAACACCAGATAATTATTTGGTGGGCGGGGCTAATGAGAGGAGCAGTTTCGATTGCTTTGGCTTTCAAACATTTCACGTACTCGGGAGTTACTGATAAGCCAGCTAATGCGACAATGATTACAAACACCATTATTGTTGTCCTTTTCACCACACTGGTGTTTGGTTTTCTAACAAAACCACTTATTCGATATCTACTTCCACACCATGTAGCAAGAGTACACAACAGAAATGAAGAAGAATCAAGGGCACGCGCTGAGGATATGAATCTACCTTTGTTATCCTTTGAGGAATCGGCAGAAACCAACATTAGCCGCGCAAAGGAAGGTCTATCCAAGTTAATAGAAAGTCCTGTGTACACCATACATTACTATTGGAGAAAGTTTGATGATGCCTACATGAGACCGATATTTGGAGGAGCACGTGCTAACCGTTCAGACTGCTAG 1602 0.3945 MGMMSLMVALNHFATNEEKIIGQDHANVVSLTLFVALLCLCLLIGHLLEGNRWINESIVAIFIGFIAGAIILLYTKGKSPHILVFDEELFFIYLLPPIIFNAGFQVKKKRFFHNFFTIMLFGVIGVFISASIITAGSWWLFPKLNFLDLDLRDYLALGTIFSSTDTVCTLQVLHQDDTPLLYSLVFGEGVVNDATSVVLFNAVQKIDISKLDGRSLSVIGDFLYLFSASTALGVIAGLITAYILKTLSFGRHSSVREISMMILMAYLSYMLAELFELSGILTVFFCGISMSHYAWHNVTETSRITTRHVFATMSFIAETFIFIYVGMDALDLEKWNKTELGIGNLMGIYSGLIFLILLGRAAFVFPLSALANYMNRRSEQTPSITLQHQIIIWWAGLMRGAVSIALAFKHFTYSGVTDKPANATMITNTIIVVLFTTLVFGFLTKPLIRYLLPHHVARVHNRNEEESRARAEDMNLPLLSFEESAETNISRAKEGLSKLIESPVYTIHYYWRKFDDAYMRPIFGGARANRSDC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01224 533 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre5g01224 533 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre5g01224 533 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre5g01224 533 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre5g01224 533 Pfam Sodium/hydrogen exchanger family 33 448 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Trre5g01224 533 NCBIfam sodium/hydrogen exchanger 3 29 473 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Trre5g01224 533 Gene3D - 150 202 - -
Trre5g01224 533 PANTHER SODIUM/HYDROGEN EXCHANGER 22 523 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01224 Trre-Chr5 8637933 8642180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01224 6 533 Antiporters AT5G55470 68.609 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01224 - - gmx:100813332 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01224 5 8637933 8642180 Trre5g01224 5 8637933 8642180 ECH