Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01216 ATGGCATCTGCAGAATCAAGTCCACTGATGCCTTTTGATGATGTCAAGACTTCTGTCACTGAGTTCGCTCGAGGATTTGACCACAATTACTATCAACCACTTCACTTGGCAATACTAAAAGGAGACTGGAAATCTACAGAGGCTTTCCTTGATAATGATCCAAGCGCATTGACAGCGAAGGTTACGGTATATGGTAGGACTCCACTTCATGTTGCAGCAGTAGGAGCTCAGTGGAAACTAGTTGAGAAGTTGGCGCAACATCAACAGATGCCTGCAAATGTTCTTGCAGAATTGGATTTGATGGGCTGTACTTGCCTTCACTATGTTGCAATGGGCGAAAGCGTAGATGCTGCGAAAGCATTGGTGGCTAAAAATCCTTCTGTTACACAACTTACCGATTTTAAAGGATTCACACCAGTCATGTATAGTATTACTTCTTCAAGATGTAAAGAGATGGTTGGGTATCTTGTTTTAAATACTTCAGATGAAAGACCTGGCTGTCCATTCTCTGGTCCGTTTGCTAGTCAACTTGTTGCTTTGCTCACTGCCTCCGGATTTCACGATATCACCATGCATCTTCTGCAGCGCTATCCTAACTTGGCTACTATTTCTGATTCAAATGGAAGCAGCATTATACTTAATGTTCTAACAAAATTTCCATGGCACTTTAATAGTGGACACATGCCTTATTTGTTTCGTTATAGATTCATTTACAAATGGGTTCCTGGGGAACTGGAATATGGAAATACAATATGGAATGCACTTCAAACTCTTTTTCCTGGCTTAAAGGTAACCAGATATATAAAGTTGAGATGTCTATCTGCTGTGAAATTGGCTGAATTTGTTTTCGCGCAAGCATCAACCATGAATGACTATCAATTCTGGCAATCTTTTGTGAGTCCGGAAATTCTTTTCAGGGCAACATCATCTGGCATAGTTGAGATTTTGGAGACTTGTTTTAAGTTTTTTCCTGATTTGGTTTGGACTCACATTCCAAATGAAGGTTATTTGGTTCAAATTGCCATCAAGAATAGGCAAGAACAAGTTTTTACTCTTCTATGCAAGATGCCAATAATGTGCAAGCTTTTAGTGTTGGCGATAGATGAATCAAATAACACTACATCACATCTGGCAGCAAGGTTTTCTTCTCGAGAAGAATCAAATTTAGGTGCTGCATTTCAAATCATTAAAGAGTTAGAGTGGTTCAAGGTAGTACATAAATTGGATGACCCTCTCCATGAAGAAGTTAAAAACAAAGATGGTAAAACAGCTTGGGAAGTGTTTAAGGAAGAACATAAAACATTGATCAGAGAAGGGAATAATTGGATAAAGGATAGATCAAACACTGGTATGTTAGTGGCAACTCTTATTGCGACAATCACATTTGCGGCTGCAATAACTGTACCTGGAGCCATAAATGGACGCTACACCGAAGAAGACTATGCCATGAGAATGTCCGTTGTTAGATTCCTAATCGGTTTGGAATTATTGTCCGTTGCTGCAGTGGCAACAATGGACTGTGAAACTTTTGCTACAGAACAGAAAACTGGATTGGAATTTGTTTTAGAGGCAACCTTGATGGAAAAATTCCCACATGGACAACTAGCTCTTGAATTTGGTCCCTCTAATATGTAA 1635 0.3951 MASAESSPLMPFDDVKTSVTEFARGFDHNYYQPLHLAILKGDWKSTEAFLDNDPSALTAKVTVYGRTPLHVAAVGAQWKLVEKLAQHQQMPANVLAELDLMGCTCLHYVAMGESVDAAKALVAKNPSVTQLTDFKGFTPVMYSITSSRCKEMVGYLVLNTSDERPGCPFSGPFASQLVALLTASGFHDITMHLLQRYPNLATISDSNGSSIILNVLTKFPWHFNSGHMPYLFRYRFIYKWVPGELEYGNTIWNALQTLFPGLKVTRYIKLRCLSAVKLAEFVFAQASTMNDYQFWQSFVSPEILFRATSSGIVEILETCFKFFPDLVWTHIPNEGYLVQIAIKNRQEQVFTLLCKMPIMCKLLVLAIDESNNTTSHLAARFSSREESNLGAAFQIIKELEWFKVVHKLDDPLHEEVKNKDGKTAWEVFKEEHKTLIREGNNWIKDRSNTGMLVATLIATITFAAAITVPGAINGRYTEEDYAMRMSVVRFLIGLELLSVAAVATMDCETFATEQKTGLEFVLEATLMEKFPHGQLALEFGPSNM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01216 544 Gene3D - 17 217 IPR036770 -
Trre5g01216 544 SUPERFAMILY Ankyrin repeat 25 380 IPR036770 -
Trre5g01216 544 PANTHER CASKIN 64 472 - -
Trre5g01216 544 SMART ANK_2a 101 130 IPR002110 GO:0005515
Trre5g01216 544 SMART ANK_2a 64 94 IPR002110 GO:0005515
Trre5g01216 544 SMART ANK_2a 29 59 IPR002110 GO:0005515
Trre5g01216 544 SMART ANK_2a 135 167 IPR002110 GO:0005515
Trre5g01216 544 Pfam Domain of unknown function 441 473 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01216 Trre-Chr5 8580760 8584519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01216 7 144 Miscellaneous Gene Families AT5G60070 27.536 1.85e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01216 - - tpra:123914367 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01216 5 8580760 8584519 Trre5g01216 5 8580760 8584519 ECH