Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01199 ATGGAATCGGATCTCGGCAAGCTCTTCATTGGAGGAATATCGTGGGACACTGACGAGGAACGTCTCAGGGAGTATTTTGCGTCATATGGGGAGGTAATTGAGGCTGTGATCATGCGAGATCGCGCAACAGGTCGTGCTCGTGGTTTTGGATTCGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTATCGATAAGCACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGTACAATATAAACAGACAGACTGGTAGTGTACAGGGATCGCCTGGTCCCGGTCGTACAAAGAAGATTTTTGTTGGAGGCTTACCGTCAACCATCACCGAAAGTGATTTCAAGATGTATTTTGATCAATTCGGTACAATTACTGATGTCGTAGTTATGTATGATCACAATACACAAAGGCCAAGAGGTTTTGGCTTCATCACATATGATTCAGAAGAAGCGGTCGATAGAGTTCTTTACAAAACATTTCATGAACTCAACGGAAAGATGGTTGAAGTCAAGAGGGCAGTTCCGAAAGAACTTTCACCTGGTCCCACCCGAAGCCCATTGATAGGAGGATATAACTATAGTTTGAACAGTAGGGCTAGTAGCTACCTAAACAATTATGGTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGAGTCAGAATGGATGGTAGGTTTAGTCCACTCACTGGTGGCAGAACCGGTTTTACCCCTTTCGGAAACACCGGTTATGGAATGGGGATGAACCTGGAATCGGGATTGAGCCCAAATTTTGGAGGAAACTCTAATTTCGGGAACAATTTAGGGTATGGTCGGATATTTAGTCCTTTCTATAGCGGAAACTCGAGCAGATATGCTACACCGATAGGCTATAACGGAGGTAGTGGAAGAGGCGATTCTCTTATGAACTCGACTTCTAGGAATGTCTGGGGAAATGGAGGTCTGGGTACTGCTAATAACCCGATCAGCCCTGGTGCGTTCTTGGGATCTGGAAGTGGAGCTTTCGGTGTTTCTATTGGAAACAACGGCACAAACTGGGGTCCTTCGATTCCGGCTCAGGGTGGAGGAGCTGCTTCTGGCTATGCTACTGGGAATAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGCAGCAGGATATGGAAGAAACAGCAATGCAGTTGTGAATCCATCCTCCAATTTTAATGCATCAGCCGGCGGTTATGACGGATCCTATGGGGACTTATACCGCAGTGGCAGCGGTTCGGTTTACAATGACTCTGCTTGGAGATCTGCTGCTTCTGAGATAGATGGTTCTGGTTCGTTCGGTTATGGTCTTGGCGGTATTGCATCAGATGATCCTGTGAAGACTTCCGAGGGCTATATTGGAAGCTACAATGTTGCAAGTAGACAACCTAATAGAGGTTAG 1437 0.4586 MESDLGKLFIGGISWDTDEERLREYFASYGEVIEAVIMRDRATGRARGFGFVVFADPAVAERVIIDKHIIDGRTVEAKKAVPRDDQYNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLIGGYNYSLNSRASSYLNNYGQGYSMSPIGGYGVRMDGRFSPLTGGRTGFTPFGNTGYGMGMNLESGLSPNFGGNSNFGNNLGYGRIFSPFYSGNSSRYATPIGYNGGSGRGDSLMNSTSRNVWGNGGLGTANNPISPGAFLGSGSGAFGVSIGNNGTNWGPSIPAQGGGAASGYATGNNVYEGGDSSFGLGAAGYGRNSNAVVNPSSNFNASAGGYDGSYGDLYRSGSGSVYNDSAWRSAASEIDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVASRQPNRG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01199 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Trre5g01199 478 Gene3D - 105 185 IPR012677 -
Trre5g01199 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Trre5g01199 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Trre5g01199 478 Gene3D - 6 88 IPR012677 -
Trre5g01199 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Trre5g01199 478 CDD RRM2_Hrp1p 107 184 - -
Trre5g01199 478 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Trre5g01199 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Trre5g01199 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Trre5g01199 478 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Trre5g01199 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Trre5g01199 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Trre5g01199 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Trre5g01199 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01199 Trre-Chr5 8511238 8513108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01199 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.146 2.79e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01199 K14411 - gmx:100794390 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01199 5 8511238 8513108 Trre5g01199 5 8511238 8513108 ECH