Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01198 ATGCCAAGTGTTAAACCAAATCCATCAGACAAAGACTCAGAACCATTTGTTGAGACCGATCCAACTGGCCGATACGGCCGATACAACGAACTCCTAGGATCAGGTGCTTGTAAAAAAGTATATAGAGCATTTGATCAAGAAGAAGGAATAGAAGTAGCTTGGAATCAAGTTAAGCTCAGAAACTTCAGCAATGATCCTGCAATGATTGATAGACTTTACTCAGAAGTGAGGTTGCTTAGAAGCATGACAAACAAAAACATCATTGCTCTTTATAACTTTTGGAGAGATGAGGATCATAATACATTGAATTTCATCACTGAGGTTTGTACAAGTGGGAATTTGAGAGAGTATAGGAAGAAACATAAGCATGTTTCTGTTAAGGCTTTGAAGAAGTGGTCTAAGCAGATTTTGGAAGGGTTGAATTATTTGCATCTTCATGATCCTTGTATCATTCATAGAGATCTCAATTGCAGTAATGTTTTTGTCAATGGAAATACTGGCCAGGTCAAGATTGGTGACTTAGGTTTGGCAGCAATTGTTGGAAAGAACCATTCAGCACATTCAATTCTAGGGACACCAGAATTTATGGCACCAGAATTATATGAAGAGAATTACACTGAAATGGTGGACATATACTCATTTGGAATGTTAGTCCTAGAGATGGTGACACTAGAGATTCCTTATAGTGAATGTGATAATGTTGCAAAAATATACAAAAAGGTATCTTCAGGTGTGAGACCTCAATCATTGAACAAGGTTAAAGATGCTGAAGTGAAAGCCTTCATTGAAAAATGTCTTGCTCAACCAAGGGCTAGACCTTCTGCTCAAGAATTGCTTAACGATCCTTTCTTTGGTGTTTTAGATAATGATGAAAATGATGATGATAATGACTCAATTATTTTGTAA 906 0.3675 MPSVKPNPSDKDSEPFVETDPTGRYGRYNELLGSGACKKVYRAFDQEEGIEVAWNQVKLRNFSNDPAMIDRLYSEVRLLRSMTNKNIIALYNFWRDEDHNTLNFITEVCTSGNLREYRKKHKHVSVKALKKWSKQILEGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKNHSAHSILGTPEFMAPELYEENYTEMVDIYSFGMLVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQSLNKVKDAEVKAFIEKCLAQPRARPSAQELLNDPFFGVLDNDENDDDNDSIIL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01198 301 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Trre5g01198 301 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 285 - -
Trre5g01198 301 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Trre5g01198 301 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01198 301 SUPERFAMILY Protein kinase-like (PK-like) 21 284 IPR011009 -
Trre5g01198 301 CDD STKc_WNK 24 284 - -
Trre5g01198 301 FunFam Probable serine/threonine-protein kinase WNK1 10 107 - -
Trre5g01198 301 Gene3D Transferase(Phosphotransferase) domain 1 109 287 - -
Trre5g01198 301 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g01198 301 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01198 Trre-Chr5 8496333 8497885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01198 10 287 MAP Kinase Kinase Kinase AT5G55560 83.154 1.70e-179 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre5g01198 Pkinase 2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01198 K08867 - gmx:100818126 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01198 5 8496333 8497885 Trre5g01198 5 8496333 8497885 ECH
Trre5g01198 5 8496333 8497885 Trre9g05133 9 56763691 56765614 PCT