Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01196 ATGGACGCCGGCGATTCTCAATTCCGGCGACAAGCTCCCGGAGATAAGGAACATGAACATGAAGATCCAAATCGAACTGGGTCACGACCCGATTCTGCTTCAGACGGAGCTACCACTTCTGCTAACACTTCCGGAGCTAGATACAAGCTGATGTCTCCGGCGAAGCTCCCGATCTCTAGGTCACCGGTTTTAACAATTCCGCCAGGACTAAGTCCGACTTCATTTCTTGAATCCCCCGTTCTACTCTCAAACATGAAGGTAGAACCTTCACCCACAACAGGTTCCCTTCCTAGGCTTCAACAAACAGGACATGGTTTTATAACTTCTTCTGCGCCTGCTACGTTTCCTGTAACCAGTGTACGCTTAAATAGTAATACTGTTGACGACGGAAGATACAGTTTCTTTGAGTTCAAACCGCACGGTAGATCAAATATGGTTCCTGTTGACTTTCACAACCATGCTTGTGAAAAACCTGCTCAAATAGATGGTCAAGGAAAAGTTCAATCTTTTGTTTCGCCATTAGTCAAAAGTGAAATAACAGCCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGGTTAGTTCAGGGACTGGTGCTCACGCTGAAGTCAATTTGGACGAATTAAATCCCAGCGGCAACATACCAACTGGGCTTCAAGCATCACAAGTTGATGGTAGGGGCAGTGGACTTACAGTTGCTGCCGACAAGGCATCCGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTCGAGCGCTCTCATGATGGCCAAATTACCGAAATAGTTTACAAAGGAACTCATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGTGGAAATACCATGTCTGTGCAAGAAGATAGATCTGATAGGGCTTCTTTGACTAGTCGAGACGACAAAGGATTTAATAATTATGGTCAGATGTCTCATGCAGCTGAGCGTGACAGTACTCCAGAGCTATCACCTATAGCAACAAATGCTGATAGTCCAGAGGGTGCAGGGTTTTTGTCTAACCGGAGTAATGATGAGGTTGATGAAGACGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGATATCATTCCTGTAGTCAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGACAGAAGGTGGTAAGAGGAAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCTCACGATCCAAAAGCTGTAATAACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAATAGTCATGATATGGCAGGACCATCAGCTGCAGGTGGACACACAAGAATCCGGCGAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTTAGCCCAAGAACTGCTGAAAATAGATCAAACGGTCAAGGGAGATTAATGCTTACTGAATATGGGGAGAACCAAACTCACACCAGCAATTCCAGTTTCAAGTTTGTTCATAATACACCGCCTTCGGTATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAATTCATCTTTAAACCATTCGGCTTATCCCTGCCCGCCGAACATGGGAAGAATACTTATGGGTCCCTAA 1785 0.4415 MDAGDSQFRRQAPGDKEHEHEDPNRTGSRPDSASDGATTSANTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTGHGFITSSAPATFPVTSVRLNSNTVDDGRYSFFEFKPHGRSNMVPVDFHNHACEKPAQIDGQGKVQSFVSPLVKSEITAPSDEISLSSSPVQMVSSGTGAHAEVNLDELNPSGNIPTGLQASQVDGRGSGLTVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNTMSVQEDRSDRASLTSRDDKGFNNYGQMSHAAERDSTPELSPIATNADSPEGAGFLSNRSNDEVDEDDPFSKRRKMDLDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHTRIRREESDTISLDLGMGLSPRTAENRSNGQGRLMLTEYGENQTHTSNSSFKFVHNTPPSVYFGVLNNNSNPYGSRENPSDNSSLNHSAYPCPPNMGRILMGP 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01196 594 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 155 511 IPR044810 GO:0003700
Trre5g01196 594 MobiDBLite consensus disorder prediction 468 497 - -
Trre5g01196 594 MobiDBLite consensus disorder prediction 290 380 - -
Trre5g01196 594 MobiDBLite consensus disorder prediction 1 47 - -
Trre5g01196 594 ProSiteProfiles WRKY domain profile. 236 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 SMART WRKY_cls 413 472 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 MobiDBLite consensus disorder prediction 563 581 - -
Trre5g01196 594 MobiDBLite consensus disorder prediction 29 47 - -
Trre5g01196 594 MobiDBLite consensus disorder prediction 563 582 - -
Trre5g01196 594 FunFam WRKY transcription factor 232 301 - -
Trre5g01196 594 SUPERFAMILY WRKY DNA-binding domain 239 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 ProSiteProfiles WRKY domain profile. 408 473 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 SUPERFAMILY WRKY DNA-binding domain 405 473 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 MobiDBLite consensus disorder prediction 1 28 - -
Trre5g01196 594 Gene3D WRKY domain 398 474 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 Gene3D WRKY domain 232 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 MobiDBLite consensus disorder prediction 304 319 - -
Trre5g01196 594 FunFam WRKY transcription factor 33 400 466 - -
Trre5g01196 594 Pfam WRKY DNA -binding domain 414 470 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01196 594 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01196 Trre-Chr5 8470942 8475761 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01196 51 594 WRKY Transcription Factor Family AT4G26640 55.315 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g01196 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01196 - - gmx:100781491 892.878