Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01195 ATGGACGCCGGCGATTCTCAATTCCGGCGACAAGCTCCCGGAGATAAGGAACATGAACATGAAGATCCAAATCGAACTGGGTCACGACCCGATTCTGCTTCAGACGGAGCTACCACTTCTGCTAACACTTCCGGAGCTAGATACAAGCTGATGTCTCCGGCGAAGCTCCCGATCTCTAGGTCACCGGTTTTAACAATTCCGCCAGGACTAAGTCCGACTTCATTTCTTGAATCCCCCGTTCTACTCTCAAACATGAAGGTAGAACCTTCACCCACAACAGGTTCCCTTCCTAGGCTTCAACAAACAGGACATGGTTTTATAACTTCTTCTGCGCCTGCTACGTTTCCTGTAACCAGTGTACGCTTAAATAGTAATACTGTTGACGACGGAAGATACAGTTTCTTTGAGTTCAAACCGCACGGTAGATCAAATATGGTTCCTGTTGACTTTCACAACCATGCTTGTGAAAAACCTGCTCAAATAGATGGTCAAGGAAAAGTTCAATCTTTTGTTTCGCCATTAGTCAAAAGTGAAATAACAGCCCCTTCAGATGAAATAAGTCTATCATCATCACCTGTTCAAATGGTTAGTTCAGGGACTGGTGCTCACGCTGAAGTCAATTTGGACGAATTAAATCCCAGCGGCAACATACCAACTGGGCTTCAAGCATCACAAGTTGATGGTAGGGGCAGTGGACTTACAGTTGCTGCCGACAAGGCATCCGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTCGAGCGCTCTCATGATGGCCAAATTACCGAAATAGTTTACAAAGGAACTCATGATCATCCTAAACCTCAACCAAGCCGTCGATACTCTGGTGGAAATACCATGTCTGTGCAAGAAGATAGATCTGATAGGGCTTCTTTGACTAGTCGAGACGCTGAGCGTGACAGTACTCCAGAGCTATCACCTATAGCAACAAATGCTGATAGTCCAGAGGGTGCAGGGTTTTTGTCTAACCGGAGTAATGATGAGGTTGATGAAGACGATCCTTTCTCAAAGCGAAGAAAAATGGATCTTGATATCATTCCTGTAGTCAAGCCTATCCGGGAGCCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGACATATTGGATGATGGTTATCGCTGGCGTAAATATGGACAGAAGGTGGTAAGAGGAAATCCTAACCCTAGGAGTTATTACAAATGCACAAATGCTGGTTGCCCGGTTAGAAAACACGTGGAGAGGGCATCTCACGATCCAAAAGCTGTAATAACCACATACGAGGGTAAACACAATCATGATGTACCAACTGCAAGGAATAATAGTCATGATATGGCAGGACCATCAGCTGCAGGTGGACACACAAGAATCCGGCGAGAAGAAAGTGATACTATTAGCCTTGACCTTGGAATGGGCCTTAGCCCAAGAACTGCTGAAAATAGATCAAACGGTCAAGGGAGATTAATGCTTACTGAATATGGGGAGAACCAAACTCACACCAGCAATTCCAGTTTCAAGTTTGTTCATAATACACCGCCTTCGGTATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGTTCTAGAGAAAATCCGAGTGATAATTCATCTTTAAACCATTCGGCTTATCCCTGCCCGCCGAACATGGGAAGAATACTTATGGGTCCCTAA 1746 0.4439 MDAGDSQFRRQAPGDKEHEHEDPNRTGSRPDSASDGATTSANTSGARYKLMSPAKLPISRSPVLTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLPRLQQTGHGFITSSAPATFPVTSVRLNSNTVDDGRYSFFEFKPHGRSNMVPVDFHNHACEKPAQIDGQGKVQSFVSPLVKSEITAPSDEISLSSSPVQMVSSGTGAHAEVNLDELNPSGNIPTGLQASQVDGRGSGLTVAADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRRYSGGNTMSVQEDRSDRASLTSRDAERDSTPELSPIATNADSPEGAGFLSNRSNDEVDEDDPFSKRRKMDLDIIPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSHDMAGPSAAGGHTRIRREESDTISLDLGMGLSPRTAENRSNGQGRLMLTEYGENQTHTSNSSFKFVHNTPPSVYFGVLNNNSNPYGSRENPSDNSSLNHSAYPCPPNMGRILMGP 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01195 581 MobiDBLite consensus disorder prediction 1 47 - -
Trre5g01195 581 SUPERFAMILY WRKY DNA-binding domain 392 460 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 ProSiteProfiles WRKY domain profile. 236 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 160 491 IPR044810 GO:0003700
Trre5g01195 581 Gene3D WRKY domain 385 461 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 Gene3D WRKY domain 232 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 SMART WRKY_cls 400 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 SMART WRKY_cls 241 299 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 MobiDBLite consensus disorder prediction 320 334 - -
Trre5g01195 581 MobiDBLite consensus disorder prediction 29 47 - -
Trre5g01195 581 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 Pfam WRKY DNA -binding domain 401 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 SUPERFAMILY WRKY DNA-binding domain 239 300 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 MobiDBLite consensus disorder prediction 550 568 - -
Trre5g01195 581 FunFam WRKY transcription factor 33 387 453 - -
Trre5g01195 581 MobiDBLite consensus disorder prediction 550 569 - -
Trre5g01195 581 FunFam WRKY transcription factor 232 301 - -
Trre5g01195 581 MobiDBLite consensus disorder prediction 455 484 - -
Trre5g01195 581 MobiDBLite consensus disorder prediction 290 367 - -
Trre5g01195 581 ProSiteProfiles WRKY domain profile. 395 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre5g01195 581 MobiDBLite consensus disorder prediction 1 28 - -
Trre5g01195 581 MobiDBLite consensus disorder prediction 304 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01195 Trre-Chr5 8470942 8475761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01195 51 581 WRKY Transcription Factor Family AT4G26640 54.693 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre5g01195 WRKY 1.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01195 - - gmx:100781491 877.47