Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01194 ATGCAAACATCTCAGAAACATGAAATTTCTTATGGTTCTGGCAGGTTCTACGTTGAGCCTGTACAGAATCTGGACTCATATGGCTTACCTTCGAGTGAGAATTTAGAAAATTATTCTTCCTCTGATAACAGCAGCCAAACATTCTATCCTTCTCATCAAACTCTAGAACCATACCGCACCTTTGAATCCGCTTCAACAAGTAACAACAGTTTCCCTTACCAAAATTCTCCATCTACTCTCAGTTTGTCACCAAACAATAGTCCAGTATCAAAGCTAGAGTCAAATTCATATGTGTTAAGGCCAGAACATTCTCTTGAATTTGTTAATGGTTGTCCTGAGGATGATGTCTCTTACTTGAGACACGACCTTGATGACCTGAGTCATATGATGCTAGAGCTGGAATCTGTTATGCTCGGACAAAACGCAGACATGCTAGAGATATATGATGCTGAAGTTAAACAAGAACCATCTTCAATCTTATTAGAGGCAGAGAAGAAGTGGGAAAAAAAAATGGAAATGGTATCTAAAGGAGATCTGAATGAGATGCTTTATACTTGTGCCGAAGCAGTGGATGTGAATGACATGGAGACAATTGAATGGATGGTTACCGAGTTGCGCAAAATAGTATCGATTTCGGGCACTCCCGTCGAACGATTGGGAGCGTACATGTTGGAGGCTCTTGTTTCGAGGATGGCTTCTTCAGGAAGCACAATCTACAAATCGTTAAAATGTAGTGAACCTACTGGTAATGAACTACTTTCTTATATGCATGTACTTTATGAAATATGTCCGTACTTTAAGTTCGGGTATATGTCGGCAAATGGAGCAATTGCTGAAGCTATGAAGGAGGAAAGTGAAGTACACATAATTGATTTTCAAATTGCTCAAGGAACTCAGTGGGTGAGTCTGATCCAGGCTCTTGCTCGCAGGCCTGGAGGACCCCCAAAGATTAGAATATCAGGTATTGACGACTCATATTCAGTTTATGCGCGTGGAGGAGGGATTGATATAGTGGGGGAAAGGTTATCAACGCTTGCACAGTCATGCCATGTACCCTTTGAGTTCCATGCTGTTAGAGTTTCTGCTTCTGAGGTGCAACTCGAAGACTTTGAACTTCGACCGAATGAAGCTTTGGCGGTGAATTTTGCCCTTATGCTACACCATGTGCCGGATGAAAGTGTCAACATTCATAATCATCGTGACCGGTTGTTGCGATTGGCTAAGCACATGTCTCCTAAGGTGGTGACTCTAGTTGAGCAAGAATTCAATACCAATAACGCTCCATTCTTGCAGCGTTTTGTCGAGACACTGAACTACAACTCGGCTGTTTATGAGTCGATTGATGTTGTTCTTCCAAGGGATCACAAAGAGAGGATTAATGTCGAACAGCACTGTTTGGCTCGAGAAGTTGTCAACTTGGTAGCCTGTGAAGGGGAAGAAAGAGTGGAACGTCACGAGCCTATGAGTAAGTGGAGAATGCGTTTCGCAAGGGCTGGATTTACTCCTTATCCATTGAGCTCCTTCATCAATTCTTCAATCAAGGATCTTCTCGATAGCTACCGTGGACATTACACTCTAGAAGAGAGAGATGGTGCACTATATCTTGGTTGGAAGAATCAAATTCTTGTTGCTTCTTGTGCTTGGAGATGA 1650 0.4236 MQTSQKHEISYGSGRFYVEPVQNLDSYGLPSSENLENYSSSDNSSQTFYPSHQTLEPYRTFESASTSNNSFPYQNSPSTLSLSPNNSPVSKLESNSYVLRPEHSLEFVNGCPEDDVSYLRHDLDDLSHMMLELESVMLGQNADMLEIYDAEVKQEPSSILLEAEKKWEKKMEMVSKGDLNEMLYTCAEAVDVNDMETIEWMVTELRKIVSISGTPVERLGAYMLEALVSRMASSGSTIYKSLKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESEVHIIDFQIAQGTQWVSLIQALARRPGGPPKIRISGIDDSYSVYARGGGIDIVGERLSTLAQSCHVPFEFHAVRVSASEVQLEDFELRPNEALAVNFALMLHHVPDESVNIHNHRDRLLRLAKHMSPKVVTLVEQEFNTNNAPFLQRFVETLNYNSAVYESIDVVLPRDHKERINVEQHCLAREVVNLVACEGEERVERHEPMSKWRMRFARAGFTPYPLSSFINSSIKDLLDSYRGHYTLEERDGALYLGWKNQILVASCAWR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01194 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 142 543 IPR005202 -
Trre5g01194 549 MobiDBLite consensus disorder prediction 25 87 - -
Trre5g01194 549 ProSiteProfiles GRAS family profile. 170 549 IPR005202 -
Trre5g01194 549 Pfam GRAS domain family 180 549 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01194 Trre-Chr5 8467111 8468760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01194 1 549 GRAS Transcription Factor Family AT1G50600 54.792 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g01194 GRAS 3.7e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01194 - - gmx:100785400 863.988