Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01187 ATGGAAGATTGTGAAAGTAGTGAAATTGGGAACCCTAATTGGGAAATTGCACTAAGAAAGTGTGAGAATGTTTTAGCTTCAGGAACCAAATCTATGAAAATTAAAGCTATGGTTAATCTAGCTAATTACTCTAAACAAGCCCCTGAACATGTATTATCTAGCTTCATACCAATTCTCACTGAGATTCTTGGTCATTATGACATTGCAAATGATTCGGTTCCGGATTTACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGTAGAGGTGATGGTAGTTTGGCAATTGAAATGAGTCGACATGGTGTTTCGGATACTTTGATAAGGTTGTTGCCTCGTGTCGAGGGAATGATGCAGAAAGTTTTGATAAAATGTTTAATGGTTGTTGTTAGTTTTTGTAGTACAAGTAGGACAGCTGTTGGTGTTAATGGTGGTTTAGAAATTATAATCAGTTTGTTGATTACTTGTAGCGATGATGTTAGATTGTATTTGTTAGAGATTTTGAGTGCATTGGCGCTTTTGAGGGAAGTTAGGAAGGGACTTATTACTTTAGGAGCTCTTTGTTTTATTGTGGAAGCTGCTAGTGTTGGCAGCATGATTTCAAGGGAAAGGGCATGTCAATCGATTGGATTGATTGGAGTTACGAAACAAGATAGGCGTACACTTGTTGAATTGGGAGTCATACCTGTGCTTGTGGAGTTGTTTCGCGTAGGAGATAATACCATGAAACTTGTTGCCGGCAATTGTCTTGGTGTGGTAGCTCGTCTTGATTACATTACACTAGTTGCTCAAGCTGGGGCTATACCTCTTTATGCCGAGCTTCTTAAAGGACCTGATGTTTCTGGTAAGGAGATAACTAAGAATATGTTTTGTATATTGGCTCTCGAAGAGGCGAATGCTGTTGAAATTGTTGGCCACTTGGTTAGGATTCTTAGAGAAGATGATGGTGAAGCTAAAGCAGCAGCTGCTGATGTGATTTGGGATCTGTCTGCAAACCGCAACACAATTTCTGTGATTCGGGATTCAGGTGCCATCACTATCCTTGTCGAGCTTTTGAGCCATGGGAGTGAGGAAGTAAAGCTAAATGTTTCTGGTGTATTTTCTCAGCTGAGCTATAGAGAAAGCGGTAGAATGGCCCTTGATGATGCTGGCGCAATTCCAATTCTCATTGACTTGCTACATGAGGAGACCGAGGAACTAAGTGATAATGTTGTTGAGTCTCTTTTTAATTTTCATGAAGATCCATTATACTGTGATAGATTATCTGATCTTGTTGATAGTCCTTCCTTTAGGAATATGCTGAATAGACTATATAGTAATCGTTCATCGAACGGGATTATGCCTGGGTATGTGCCTAGAGCTTTACGTACAATTAGTGTTGAGGAATTCATTTGGAGTCAGAATCATGTTTAA 1419 0.3961 MEDCESSEIGNPNWEIALRKCENVLASGTKSMKIKAMVNLANYSKQAPEHVLSSFIPILTEILGHYDIANDSVPDLLQEAAAYCLKCIACRGDGSLAIEMSRHGVSDTLIRLLPRVEGMMQKVLIKCLMVVVSFCSTSRTAVGVNGGLEIIISLLITCSDDVRLYLLEILSALALLREVRKGLITLGALCFIVEAASVGSMISRERACQSIGLIGVTKQDRRTLVELGVIPVLVELFRVGDNTMKLVAGNCLGVVARLDYITLVAQAGAIPLYAELLKGPDVSGKEITKNMFCILALEEANAVEIVGHLVRILREDDGEAKAAAADVIWDLSANRNTISVIRDSGAITILVELLSHGSEEVKLNVSGVFSQLSYRESGRMALDDAGAIPILIDLLHEETEELSDNVVESLFNFHEDPLYCDRLSDLVDSPSFRNMLNRLYSNRSSNGIMPGYVPRALRTISVEEFIWSQNHV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01187 472 SUPERFAMILY ARM repeat 70 443 IPR016024 -
Trre5g01187 472 Gene3D - 259 436 IPR011989 -
Trre5g01187 472 Pfam Armadillo/beta-catenin-like repeat 338 373 IPR000225 GO:0005515
Trre5g01187 472 Gene3D - 17 258 IPR011989 -
Trre5g01187 472 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 387 IPR000225 GO:0005515
Trre5g01187 472 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 309 426 - -
Trre5g01187 472 SMART arm_5 290 333 IPR000225 GO:0005515
Trre5g01187 472 SMART arm_5 334 374 IPR000225 GO:0005515
Trre5g01187 472 SMART arm_5 217 257 IPR000225 GO:0005515
Trre5g01187 472 SMART arm_5 135 175 IPR000225 GO:0005515
Trre5g01187 472 SMART arm_5 43 90 IPR000225 GO:0005515
Trre5g01187 472 SMART arm_5 375 415 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01187 Trre-Chr5 8383407 8384825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01187 309 413 U-box Gene Family AT2G23140 33.333 1.10e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01187 - - tpra:123912979 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01187 5 8383407 8384825 Trre5g01187 5 8383407 8384825 ECH