Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01179 ATGCAATCAATGTTGGTGTCAATGATCTATACTAAAGGTTTGACTCTTTCGTGTCAATCGAGAGCGGAACACAGCAGCGGCGAAATTATCAACTTATTGACGGTTGATGCTGAAAGGATAGGTGAATTTTGTTGGTACATGCATGATATATGGATGGCTGTTCTTCAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTAGGGGTTGCTTCAGTAGCTACTTTTGCCGCCACCGTAGTTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAAGAGAGGTTCCAAAGTAAGTTAATGGAATTCAAAGATAGAAGAATGAAGGCGACATCTGAGATTCTAATGAACATGAGGATTCTTAAACTTCAAACATGGGAGATGAAATTCTTATCAAAGATTATTCAGATTAGGAAGTTAGAGGAGATTTGGCTAAAGAAATTTCTTATTGGTACAGCAATTGCTAAATTTATCTTCTTTAACGCCCCAACGTTTGTTGCTGTGGTTACTTTTGGTACTTGTGTTCTTTTAGGCATTCCACTTGAATCAGGAAAGATCTTATCTGCACTTGCAACATTTAGAATTCTTCAAATGCCAATTTTTTCTCTTCCCGACACAATTTCAGTGATTGCAGAAACCAAGGTTTCTGTAGATAGGATTGCCGCGTTTCTTCGTCTAGATGATTTGCAGGCCGATGTAGTGGAGAAGCTTCCACGCAGTAGTTCTGATATAGCAATTGAAATAGAAGACGGAAATTTCACTTGGGATTTATCTTCTGTCAATACAACGTTGAAAAACATAAATCTTAAAGTTTTTCATGGAATGAGGGTTGCTGTTTGTGGTACGGTTGGATCGGGAAAGTCTAGTTTACTTACTTGTATAATAGGGGAAATGCCAAAGCTATCTGGAACCTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCGCCATGGATACAAAGTGGGAAGATAGAAGAAAATATACTCTTTGGTAGCGAAATGGATAGGGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCATTGAAGAAAGACTTGGAGGTCTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGGATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCGTTGTACCAAGATGCTGATATATATCTGCTGGATGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGTTTGCTTGAACTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTGCCTGATGCTGATCTGATACTGGTCATGAAAGACGGAAGGATAACTCAGTCAGGAAAATACAATGACATACTTACGTCGGGAACAGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCATTGTCTTCAGTGAAGTCCTTAGAGAGAAGGAATACATTTAAAGAATCTAGTATTACCGGGGAAGACACAGGTTTATTAAGTGATTTTGAACTTGAGCAAGAAGTGGAAAACATAGATGACCAAAACAGCAAGTTAGATGACACAGTTGAGCCGAAAGGCCAACTTGTTCAAGATGAAGAACGGGAAAAGGGTATAATTGGACTTAAAGTGTTCTGGACATACATCACAATAGCTTATGGAGGAGCTCTTGTACCGTTTATATTTCTTTCACAGATACTCACTGTGGTTTTACAGATTGCAAGCAATTATTGGATGGCATTGGCAACTCCTGTTTCAGCAACTGCAGAACCTGATATTGGAAGCCTTACTCTTATGGTTGTCTATGTTTCTTTAGCAATTGGAAGTTCCTTTGCAACCCTTGCCAGAACAGTTCTTGGAGTGATATCTGGATACAAGACTGCCACCTTGCTCTTCAATCAAATGCATCTCAGCTTTATTCGAGCACCGATGTCTTTTTTTGATTCCACACCAAGTGGAAGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAGTAGATATGAGCATTTCAAATCTAGCATGGGCATTTACCTACCGTGTGGTTCAGCTCTTTGGAAACATTGCTGTGATGTCTCAAGCTGCATGGCAAGTGATTATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGATACTACTCTGCATCATCACGTGAATTGGCGCGATTAACTGGTATATGTCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCGCAGCCTAAATTATACAGTGGTAGTGCAAAGGAATGGCTGAGTTTAAGATTGGATCTTTTATCCATTACAGTATTTGCATCCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCGATAACTAATGCTAGTATTGCGGGATTGGCTGTGACATATGGGATTAACCTAAGTGATATACAATCTGATTTAATTAGATTTTTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACTTCCATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAACCGACCAGATCATTCTTGGCCGTCATTCGGAGAGGTTCATATTCAGGATTTACAGGTTCAATATGCTCCTCACTTGCCTCTTGTTTTACGCGGACTAACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTAGTGCAAACACTTTTCAGACTTATTGAACCTGTTGCAGGACAAATATTGATAGATAATATCAACATTTCATTGATTGGAATTCATGATTTAAGGTCAAGATTAAGCATAATACCCCAGGATCCAACAATGTTTCAAGGGACAGTAAGAAGCAACCTGGATCCGCTTGAAGAGTACACAGATGAACAGATTTGGGAGACTCTAGATATGTGCCAACTTGGAGATGAAGTGAGGAAGAAAGAAGGAAAGCTTGACTCCACAGTTACAGAGAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTATGCCTCGGCCGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTCGATGAAGCGACTGCATCAGTTGATACAGCTACAGATACTATAATTCAGCAGACAGTTAATCAACATTTCACTGATTGCACAGTTATTACAATTGCTCATAGAATAACTTCAATCCTCGATAGTGATATGGTTCTGTTTCTCAGCGAAGGGCTTATTGAAGAATATGATTCACCAAAGAAGCTGCTTAAGGATAAATCATCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAAGTCAAACACTGGTTTTGGAAGTTGA 3369 0.3897 MQSMLVSMIYTKGLTLSCQSRAEHSSGEIINLLTVDAERIGEFCWYMHDIWMAVLQVSLALFILHRSVGVASVATFAATVVVMLLNLPVASLQERFQSKLMEFKDRRMKATSEILMNMRILKLQTWEMKFLSKIIQIRKLEEIWLKKFLIGTAIAKFIFFNAPTFVAVVTFGTCVLLGIPLESGKILSALATFRILQMPIFSLPDTISVIAETKVSVDRIAAFLRLDDLQADVVEKLPRSSSDIAIEIEDGNFTWDLSSVNTTLKNINLKVFHGMRVAVCGTVGSGKSSLLTCIIGEMPKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGSEMDREKYERVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLELLKTKTVIYITHQVEFLPDADLILVMKDGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRNTFKESSITGEDTGLLSDFELEQEVENIDDQNSKLDDTVEPKGQLVQDEEREKGIIGLKVFWTYITIAYGGALVPFIFLSQILTVVLQIASNYWMALATPVSATAEPDIGSLTLMVVYVSLAIGSSFATLARTVLGVISGYKTATLLFNQMHLSFIRAPMSFFDSTPSGRILNRASTDQSAVDMSISNLAWAFTYRVVQLFGNIAVMSQAAWQVIIVLIPVMAASIWYQRYYSASSRELARLTGICQAPVIQHFSETISGSTTIRSFEQESRFNEMNMQLIDKYSQPKLYSGSAKEWLSLRLDLLSITVFASCLVFLVSFPSSITNASIAGLAVTYGINLSDIQSDLIRFFCNLENKIISVERILQYTSIPSEAPLVIKDNRPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLIEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWETLDMCQLGDEVRKKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDTIIQQTVNQHFTDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRKSNTGFGS 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01179 1122 CDD ABC_6TM_ABCC_D1 1 220 IPR044746 GO:0140359
Trre5g01179 1122 Pfam ABC transporter transmembrane region 7 199 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01179 1122 Pfam ABC transporter transmembrane region 559 802 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01179 1122 FunFam ABC transporter C family member 3 859 1111 - -
Trre5g01179 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 468 IPR027417 -
Trre5g01179 1122 SMART AAA_5 902 1094 IPR003593 GO:0016887
Trre5g01179 1122 SMART AAA_5 273 446 IPR003593 GO:0016887
Trre5g01179 1122 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 212 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01179 1122 SUPERFAMILY ABC transporter transmembrane region 557 858 IPR036640 GO:0005524|GO:0016020
Trre5g01179 1122 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 876 1110 IPR003439 GO:0005524
Trre5g01179 1122 CDD ABC_6TM_ABCC_D2 557 851 IPR044726 GO:0140359
Trre5g01179 1122 SUPERFAMILY ABC transporter transmembrane region 5 225 IPR036640 GO:0005524|GO:0016020
Trre5g01179 1122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1101 IPR027417 -
Trre5g01179 1122 Pfam ABC transporter 894 1041 IPR003439 GO:0005524
Trre5g01179 1122 Gene3D - 859 1112 IPR027417 -
Trre5g01179 1122 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1111 - -
Trre5g01179 1122 Gene3D ABC transporter type 1, transmembrane domain 521 857 IPR036640 GO:0005524|GO:0016020
Trre5g01179 1122 Gene3D ABC transporter type 1, transmembrane domain 1 223 IPR036640 GO:0005524|GO:0016020
Trre5g01179 1122 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 246 469 IPR003439 GO:0005524
Trre5g01179 1122 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 559 839 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01179 1122 FunFam ABC transporter C family member 5 231 478 - -
Trre5g01179 1122 Pfam ABC transporter 264 398 IPR003439 GO:0005524
Trre5g01179 1122 FunFam ABC transporter C family member 10 1 228 - -
Trre5g01179 1122 ProSitePatterns ABC transporters family signature. 371 385 IPR017871 GO:0005524|GO:0016887
Trre5g01179 1122 FunFam ABC transporter C family member 5 520 857 - -
Trre5g01179 1122 CDD ABCC_MRP_domain1 246 446 - -
Trre5g01179 1122 Gene3D - 224 491 IPR027417 -
Trre5g01179 1122 CDD ABCC_MRP_domain2 874 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01179 Trre-Chr5 8359525 8365078 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01179 246 490 Calmodulin-binding Proteins AT2G36910 29.545 6.22e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01179 - K05666 gmx:106794105 1766.51