Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01177 ATGACTAAACTTGGCCCTCTAGAAGAGTCCCTTTTGAATGGTGAAGCTAGTGTAAGCAACAACAATTCTGATTCCATAAACACACTAAAAACCTGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTAATAACTTTAGGAAGTAAAAAGACTTTAGACCATGAAGACCTTCCACTGCTTTCTACCAATGACAGTGCCTATGGAACTTTTTCAACTTTTAAAAAAAAGCTTGAGTTGGAGTGTGAAAATTTTGTTCAATACCTCGATGATGAAAACAAGGCTAAAAAAGAAGGCTATATTTTGGCTATGACGTTTGTTGCGGCAAATCTTGTCGACTCTCTTTTTACGAAGCACTATGTGTTTAAGACCCAACAGGTTGGTGTACGGATGAAATCAATGTTGGTATCAATGATTTATACAAAAGGTTTGACTCTTTCGTGTCAATCGAAAGCTGAACACAGCAGCGGCGAAATCATCAACTTATTGACGGTTGATGCTGCAAGGATAGATGAAAATTGGTCGTACATAAATTGTATATGGATGACCGTTCTTCAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTAGGGGTTGCATCAGTAGCTGCTTTTTTCGCCACCGTAGTTGTGATGTTGCTAAACCTTCCTGTGGCATCATTGCAGGAGAGGTTCCAAGGTAAGTTAATGGAATTCAAAGATAAAAGAATGAAGGCGACATCTGAGATTCTAATGAACATGAGGATTCTTAAACTTCAAACATGGGAGATGAAATTCTTATCAAAGATTATTCAGATTAGGAAGTTAGAGGAGATTTGGCTAAAGAAAATTCTTGTTTGTTCAGCAATTGCTAAATTTATCTTCTTTAACGCCCCGACATTTATTGCCGTGGTTACTTTTGGTACTTGTGTTCTTATAGGCATTCCACTTGAATCAGGAAAGATCTTATCTGCACTTGCAACATTCAGAATTCTTCAAATGCCTATTTTTGTTCTTCCCGAAACAATTTCTGTGATTGCAGAAACAAAGGTTTCACTAGATAGGATTGCAGCGTTTCTTCGTCTAGATGATTTGCAGTCCGATGTAGTGGAGAAGCTTCCGCGCAGTAGTTCTGATATAGCAATTGAAATAGAAGACGGAAATTTCACTTGGGATTTATCTTCTGTCAATACAACGTTGAAAAACATAAATCTTAGAGTTTTTCATGGAATGAGGGTTGCTGTTTGTGGTACGGTTGGATCTGGAAAGTCTAGTTTACTTACTTGTCTAATAGGGGAAATCCCAAAGCTATCTGGAACCTTGAAGGTGTGTGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAAAGTGGGAAGATAGAAGAAAATATACTCTTTGGTAGCGAAATGGATAGGGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCATTGAAGAAAGATTTACAGGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGGATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCTCGTGCTCTGTACCAAGATGCTGATATATATCTGCTAGACGATCCCTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAAGAGTGTTTGCTTAACCTTTTGAAAACAAAAACTGTGATATACATAACACATCAAGTAGAGTTCTTACCTGACGCTGATCTGATACTGGTCATGAAAGAAGGAAGGATAATTCAATCAGGAAAATACAGTGACATTCTTACGTCGGGAACAGATTTTATGGAACTTGTAGGTGCACATAGAGCAGCATTGTCTTCAGTGAAGTCCTTAGAGAGAAGGAATACATTTAAAGAATCAAGTATTACCGGGGAAGACACGGGTTTGTTAAGTGATTTTGAACTTGAGCAAGAAGCGGAAAACATAGACGAACAAAACAGCAAGTTAGATGACACAGCTGAGCCAAAAGGCCAACTTGTTCAAGATGAAGAACGGGAAAAGGCAACTGCAGAACCTGATATTGGAAGCCTTACTCTTATGGTTGTCTATGTTTCTTTAGCAGTTGGAAGTTCCTTTGCCACTCTTGCCAGAACAGTTCTTGCAGTGATATCTGGATACAAGACTGCTACCTTGCTCTTCAATCAAATGCATTTCAGCTTTATTCGAGCACCAATGTCTATTTTTGATTCCACACCAAGTGGAAGAATTCTTAATAGAGCTTCAGGAGACCAAAGTGCAATAGATATGAGCATTTCAGGACTAGCATGGGCATTTACCTACCGTGTGGTTCAACTCGTTGGAAATGTTGCCGTGATGTCTCAAGCTGCATGGCAGGTGATTATAGTATTGATTCCTGTCATGGCAGCTAGTATATGGTACCAGCGGTACTACTCTGCATCAGCACGTGAATTGGCGCGATTAACTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGAACAACAACCATAAGAAGTTTTGAGCAAGAATCAAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCACAACCTAAATTATACAGTGGTAGTGCAAAAGAATGGCTCAGTTTAAGATTGGATCTTTTATCCATTACAGTATTTGCATCCTGCTTGGTTTTCTTGGTATCTTTTCCAAGTTCAATAACTAATGCTAGTATTGCGGGATTGGCTGTGACATATGGGATTAACCTAAGTGATATACAATCTGGTTTAATTGAGTTCTTTTGCCAATTGGAGAACAAAATTATATCTGTAGAACGAATACTTCAGTACACTTCCATTCCAAGTGAAGCACCTCTTGTAATAAACGACAACCGACCAGGTCGTTCTTGGCCGTCATTCGGAGAGGTTCATATTCAGGATTTACAGGTTCAATATGCTCCTCACTTGCCTCTTGTTTTACGCGGACTAACATGCACTTTTACTGCTGGAGCAAAAACTGGCATTGTTGGAAGAACTGGAAGTGGAAAATCAACACTAGTGCAAACACTTTTCAGACTTATTGAACCAGTTGCAGGAAAAATATTGATTGATAATATCAACATTTCATTGATTGGAATTCATGATTTAAGGTCAAGATTAAGCATAATACCTCAGGATCCAACAATGTTTCAAGGGACAGTAAGAAGCAACCTTGACCCGCTCGAAGAGTACACAGATGAACAGATTTGGGAGGCTATAGATATGTGCCAACTTGGAGATGAAGTGAGGAAGAAAGAAGGAAAGCTCGACTCCACAGTTAACGAGAATGGAGAAAATTGGAGCATGGGTCAAAGGCAGTTGGTATGCCTTGGACGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTCGATGAAGCGACTGCATCAGTTGATACAGCTACAGATAATATAATTCAGCAGATAGTTAACCAACATTTCACTGATTGCACAGTTATTACCATTGCTCATAGAATAACTTCAATCCTTGATAGTGACATGGTTCTGTTTCTCAGTGAAGGGCTTATTGAAGAATATGATTCACCAAAGAAGCTGCTTAAGGACAAATCTTCATCCCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3630 0.3873 MTKLGPLEESLLNGEASVSNNNSDSINTLKTCYSNAGFFSILTFSWMSPLITLGSKKTLDHEDLPLLSTNDSAYGTFSTFKKKLELECENFVQYLDDENKAKKEGYILAMTFVAANLVDSLFTKHYVFKTQQVGVRMKSMLVSMIYTKGLTLSCQSKAEHSSGEIINLLTVDAARIDENWSYINCIWMTVLQVSLALFILHRSVGVASVAAFFATVVVMLLNLPVASLQERFQGKLMEFKDKRMKATSEILMNMRILKLQTWEMKFLSKIIQIRKLEEIWLKKILVCSAIAKFIFFNAPTFIAVVTFGTCVLIGIPLESGKILSALATFRILQMPIFVLPETISVIAETKVSLDRIAAFLRLDDLQSDVVEKLPRSSSDIAIEIEDGNFTWDLSSVNTTLKNINLRVFHGMRVAVCGTVGSGKSSLLTCLIGEIPKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGSEMDREKYERVLEACSLKKDLQVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLNLLKTKTVIYITHQVEFLPDADLILVMKEGRIIQSGKYSDILTSGTDFMELVGAHRAALSSVKSLERRNTFKESSITGEDTGLLSDFELEQEAENIDEQNSKLDDTAEPKGQLVQDEEREKATAEPDIGSLTLMVVYVSLAVGSSFATLARTVLAVISGYKTATLLFNQMHFSFIRAPMSIFDSTPSGRILNRASGDQSAIDMSISGLAWAFTYRVVQLVGNVAVMSQAAWQVIIVLIPVMAASIWYQRYYSASARELARLTGICQAPVIQHFSETISGTTTIRSFEQESRFNEMNMQLIDKYSQPKLYSGSAKEWLSLRLDLLSITVFASCLVFLVSFPSSITNASIAGLAVTYGINLSDIQSGLIEFFCQLENKIISVERILQYTSIPSEAPLVINDNRPGRSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKSTLVQTLFRLIEPVAGKILIDNINISLIGIHDLRSRLSIIPQDPTMFQGTVRSNLDPLEEYTDEQIWEAIDMCQLGDEVRKKEGKLDSTVNENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQIVNQHFTDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01177 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 956 1188 IPR027417 -
Trre5g01177 1209 Gene3D - 947 1199 IPR027417 -
Trre5g01177 1209 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01177 1209 Pfam ABC transporter 981 1128 IPR003439 GO:0005524
Trre5g01177 1209 SUPERFAMILY ABC transporter transmembrane region 102 361 IPR036640 GO:0005524|GO:0016020
Trre5g01177 1209 SUPERFAMILY ABC transporter transmembrane region 681 945 IPR036640 GO:0005524|GO:0016020
Trre5g01177 1209 CDD ABC_6TM_ABCC_D2 671 938 IPR044726 GO:0140359
Trre5g01177 1209 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 926 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01177 1209 FunFam ABC transporter C family member 5 658 944 - -
Trre5g01177 1209 Pfam ABC transporter 400 534 IPR003439 GO:0005524
Trre5g01177 1209 FunFam ABC transporter C family member 5 367 614 - -
Trre5g01177 1209 FunFam ABC transporter C family member 10 86 364 - -
Trre5g01177 1209 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 963 1197 IPR003439 GO:0005524
Trre5g01177 1209 CDD ABCC_MRP_domain2 961 1181 - -
Trre5g01177 1209 SMART AAA_5 409 590 IPR003593 GO:0016887
Trre5g01177 1209 SMART AAA_5 989 1181 IPR003593 GO:0016887
Trre5g01177 1209 Gene3D ABC transporter type 1, transmembrane domain 36 360 IPR036640 GO:0005524|GO:0016020
Trre5g01177 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 604 IPR027417 -
Trre5g01177 1209 Pfam ABC transporter transmembrane region 99 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01177 1209 Pfam ABC transporter transmembrane region 683 889 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01177 1209 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 684 1197 - -
Trre5g01177 1209 MobiDBLite consensus disorder prediction 646 672 - -
Trre5g01177 1209 Gene3D ABC transporter type 1, transmembrane domain 659 946 IPR036640 GO:0005524|GO:0016020
Trre5g01177 1209 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 605 IPR003439 GO:0005524
Trre5g01177 1209 CDD ABC_6TM_ABCC_D1 91 356 IPR044746 GO:0140359
Trre5g01177 1209 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524|GO:0016887
Trre5g01177 1209 FunFam ABC transporter C family member 3 946 1198 - -
Trre5g01177 1209 Gene3D - 361 627 IPR027417 -
Trre5g01177 1209 CDD ABCC_MRP_domain1 382 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01177 Trre-Chr5 8348781 8355059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01177 382 626 Calmodulin-binding Proteins AT2G36910 28.352 6.77e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01177 K05666 - gmx:100795627 1780.76