Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01176 ATGACTAAACTTGCCCCTCTTGAAGAGTCTCTTTTGAATGGTGAAGCTAGTGTAAGCAACAACAATTCTGATTCCAAAAAGACACCCATAAGAAGTTATTCAAATGCTGGATTTTTCAGTATTCTTACTTTTTCATGGATGAGTCCACTAATAACTTTAGGCAGTAAAAAGACTTTAGACCATGAAGACCTTCCACTGCTTTCTACCAATGACAGTGCCTATGGAACTTTTTCAACTTTTAAAAACAAGCTTGAGTTGGAGTGTGACAATCTTGTTCAATACCTCAATGATGAAAACAAGGTTAAAAATGATGGCTATATTTTGGCTATGACGTTTGTTGTGGCGAAGCTTGTCGAGTGTCTTTCACAGAGGCACTGGATGTTTAAGTTCCAACAGGTTGGTGTTAGGATGCAATCAATGTTGGTGTCAATGATCTATGCTAAAGGTTTGACCCTTTCAAGTCAATCAAAAGAGCAACATAGCAGTGGCGAAATTATCAACTTATTGACTGTTGATGCTGCAAGAATAGGCGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTTTACAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTAGGGGTTGCTTCAGTAGCTGCTTTTGCCGCTACCGTAGTTGTGATGTTGCTAAACCATCCTATCGCATCAATGCAAGAGAAATTCCAAGGTAAGTTAATGGAGTTCAAAGATAAAAGAATGAAGGCGACGTCTGAGATTCTAATGAACATGAGGATTCTTAAACTGCAAGCGTGGGAGATGAAGTTCTTATCAAAGATCATTAGGGTTAGGAAGTTAGAGGAGATATGGCTAAAGAAATTTCTTGTTGGTTCAGCAATTGTTAGATTTCTGTTTTTTAATGCGCCAACATTTGTTGCTGTCGTCACTTTTGGTGCTTGTGTTCTTCTAGGCATCCCACTTGAATCAGGAAAGATCTTAACTGCTCTTGCAACATTCCGAATTCTTCAAATGCCTATATATAATCTTCCTGACACAATTTCAATGATTGCACAAACCAAAGTTTCTCTAGATAGGATTGTCGCGTTTCTTCGTCTAGATGATTTGCAAACTGATGTAGTGGAGAAGCTTCCACGAGGTAGTTCTGATATAGCAATTGAAATAGATAATGGAAATTTCACTTGGGATTTATCTTCTGTGAATACAACATTGAAAAACATAAATCTTAGAGTTTTTCATGGCATGAGAGTTGCTGTTTGTGGTACTGTTGGATCAGGAAAGTCTAGTTTACTTTCTTGTATAATAGGGGAAATACCAAAGCTATCTGGAACCTTGAAAGTGTGTGGAAAAAAGGCTTATGTTGCTCAATCGCCGTGGATACAGAGTGGGAAGATAGAAGAGAATATATTATTTGGTAGCAAAATGGATAGTGAAAAGTATGAGAGGGTGCTAGAAGCATGTTCATTGAAGAAAGACTTGGAGGTTTTACCATTTGGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTTCAAATAGCTCGTGCTCTTTATCAAGATGCTGATATATATCTTCTAGATGATCCGTTTAGTGCTGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAGTGTTTGATTGGCCTTTTGAAAACAAAAACAGTGATATACATAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTGATACTTGTCATGAAAGAAGGAAGGATAACACAATCAGGAAAATACAATGACATTCTTACGTCGGGAACCGATTTTATGGAACTTGTAGGCGCACATAGAGCAGCGTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGAATGCATTTAAAGAATCTAGTATTACCAGGGAAGACACAGGTTTATTAAGTGATTTTGAACTTGAGCTAGAAGTGGAAAACATAGATGATCAAAAAGGAAAGTTAGACGACACAGTTGAGCTCAAAGGACAACTTGTTGAAGACGAAGAACGAGAAAAGGGTAGAATTGGGTTTAAAGTGTTCTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTACCTTTAATATTTCTTTCGCAGATACTCACTGTGGTTTTACAGATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTACAGCAACTGCAGAACCTGATATCGGAAGCCTCACTCTTATGGTTGTTTATGTTTCTTTGGCAATTGGAAGTTCCTTTGGCACCCTTGCCAGAGCAATTCTTGCTGTAATAGCTGGATACAAGACTGCTACAATGCTCTTCAATCAAATGCATTTTAGCTTTATTCGAGCACCAATGTCGTTTTTTGATGCCAATCCAAGTGGAAGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATATGACCATTCCAAATCTAGCATGGGGATTTACCTACAATCTGGTTCAGGTCTTAGGAAATGTTGCTGTGATGTCCCAAGCTGCGTGGCAGGTGTTTATTGTATTGATTCCTGTCATGGCAACTTGCATATGGTACCAGCGATACTACTCTGCATCAGCACGTGAATTGGCACGATTAACTGGCATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACAATAAGAAGTTTTGAGCAAGAATATAGATTTAATGAAATGAATATGCAATTGATAGACAAATATTCGCAACCTAAATTATACAGTGCTAGTGCAATGGAATGGCTGAGTTTCAGATTGGATCTTTTATCCACTACAGTATTTGCGTTCTGCTTGGTGTTCTTGGTATCATTTCCAAGTTCAATAGCTGATCCTAGCATTGCGGGATTGGCAGTGACATATGGGATTAGTCTAAATTCTGCACAATTTAGTTTAATTTGGATTCTTTGCAATTTGGAAAACAAAATTATATCTGTAGAAAGAATTCTTCAGTACACCTCCATCCCAAGTGAAGCACCTCTTTTAATCAAAGACAATCAGCCAGATCATTCCTGGCCATCATTTGGAGAAGTTCATATCCAGGATTTACAGGTTCAATATGCTCCTCACTTGCCTCTTGTTTTACGCGGACTAACATGCACTTTTACTGCTGGAGCAAAAACTGGAATTGTGGGAAGAACAGGAAGTGGTAAAACAACACTAGTACAAGCACTTTTCAGACTTGTTGAACCTGTAGCTGGACAAATATTGATAGATAACATCAACATCTCGTTGATTGGTATTCATGATTTAAGGTCCAGACTAAGCATAATTCCTCAAGATCCAACAATGTTTGAAGGGACCGTAAGAAGCAACCTGGACCCGCTCGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTGAGAAGGAAAGAAGGAAAGCTTGATTCCACAGTTACCGAGAATGGAGAAAACTGGAGCATGGGTCAAAGGCAATTGGTATGCCTCGGCCGTGTTCTACTTAAGAAGAGCAAGATCTTGGTGCTTGACGAAGCTACTGCATCAGTTGATACAGCTACAGATAATATTATTCAGCAGACAGTTAAGCAACATTTCTCTGATTGCACAGTCATTACCATTGCTCATAGAATAACTTCGATCCTCGATAGTGACATGGTTCTGTTTCTCAGCGAAGGTCTTATTGAAGAATATGATTCACCAAAAAAGCTGCTTAAGGACAAATCTTCATCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGGTCAAACACTGGTTTTGGAAGTTGA 3777 0.3876 MTKLAPLEESLLNGEASVSNNNSDSKKTPIRSYSNAGFFSILTFSWMSPLITLGSKKTLDHEDLPLLSTNDSAYGTFSTFKNKLELECDNLVQYLNDENKVKNDGYILAMTFVVAKLVECLSQRHWMFKFQQVGVRMQSMLVSMIYAKGLTLSSQSKEQHSSGEIINLLTVDAARIGEFCWYMHDPWMAVLQVSLALFILHRSVGVASVAAFAATVVVMLLNHPIASMQEKFQGKLMEFKDKRMKATSEILMNMRILKLQAWEMKFLSKIIRVRKLEEIWLKKFLVGSAIVRFLFFNAPTFVAVVTFGACVLLGIPLESGKILTALATFRILQMPIYNLPDTISMIAQTKVSLDRIVAFLRLDDLQTDVVEKLPRGSSDIAIEIDNGNFTWDLSSVNTTLKNINLRVFHGMRVAVCGTVGSGKSSLLSCIIGEIPKLSGTLKVCGKKAYVAQSPWIQSGKIEENILFGSKMDSEKYERVLEACSLKKDLEVLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLIGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGKYNDILTSGTDFMELVGAHRAALSSVKSLERRNAFKESSITREDTGLLSDFELELEVENIDDQKGKLDDTVELKGQLVEDEEREKGRIGFKVFWKYITTAYGGALVPLIFLSQILTVVLQIASNYWMALATPVTATAEPDIGSLTLMVVYVSLAIGSSFGTLARAILAVIAGYKTATMLFNQMHFSFIRAPMSFFDANPSGRILNRASTDQSAIDMTIPNLAWGFTYNLVQVLGNVAVMSQAAWQVFIVLIPVMATCIWYQRYYSASARELARLTGICQAPVIQHFSETISGSTTIRSFEQEYRFNEMNMQLIDKYSQPKLYSASAMEWLSFRLDLLSTTVFAFCLVFLVSFPSSIADPSIAGLAVTYGISLNSAQFSLIWILCNLENKIISVERILQYTSIPSEAPLLIKDNQPDHSWPSFGEVHIQDLQVQYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQALFRLVEPVAGQILIDNINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRRKEGKLDSTVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNTGFGS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01176 1258 FunFam ABC transporter C family member 5 367 614 - -
Trre5g01176 1258 Pfam ABC transporter 1030 1177 IPR003439 GO:0005524
Trre5g01176 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 604 IPR027417 -
Trre5g01176 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 695 975 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01176 1258 FunFam ABC transporter C family member 5 657 993 - -
Trre5g01176 1258 FunFam ABC transporter C family member 3 995 1247 - -
Trre5g01176 1258 Gene3D ABC transporter type 1, transmembrane domain 657 993 IPR036640 GO:0005524|GO:0016020
Trre5g01176 1258 Gene3D ABC transporter type 1, transmembrane domain 36 362 IPR036640 GO:0005524|GO:0016020
Trre5g01176 1258 FunFam ABC transporter C family member 10 85 364 - -
Trre5g01176 1258 SMART AAA_5 1038 1230 IPR003593 GO:0016887
Trre5g01176 1258 SMART AAA_5 409 582 IPR003593 GO:0016887
Trre5g01176 1258 CDD ABC_6TM_ABCC_D2 693 987 IPR044726 GO:0140359
Trre5g01176 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 605 IPR003439 GO:0005524
Trre5g01176 1258 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1012 1246 IPR003439 GO:0005524
Trre5g01176 1258 Pfam ABC transporter 400 534 IPR003439 GO:0005524
Trre5g01176 1258 Pfam ABC transporter transmembrane region 695 938 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01176 1258 Pfam ABC transporter transmembrane region 96 335 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01176 1258 Gene3D - 363 628 IPR027417 -
Trre5g01176 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1237 IPR027417 -
Trre5g01176 1258 SUPERFAMILY ABC transporter transmembrane region 691 994 IPR036640 GO:0005524|GO:0016020
Trre5g01176 1258 Gene3D - 995 1248 IPR027417 -
Trre5g01176 1258 SUPERFAMILY ABC transporter transmembrane region 100 361 IPR036640 GO:0005524|GO:0016020
Trre5g01176 1258 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 34 1246 - -
Trre5g01176 1258 CDD ABC_6TM_ABCC_D1 91 356 IPR044746 GO:0140359
Trre5g01176 1258 CDD ABCC_MRP_domain2 1010 1230 - -
Trre5g01176 1258 ProSitePatterns ABC transporters family signature. 507 521 IPR017871 GO:0005524|GO:0016887
Trre5g01176 1258 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01176 1258 CDD ABCC_MRP_domain1 382 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01176 Trre-Chr5 8341719 8347574 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01176 382 805 Calmodulin-binding Proteins AT2G36910 25.314 3.12e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01176 - K05666 gmx:106794105 1982.22