Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01173 ATGCAGGTGCGTTATGCTCCACATTTGCCGCTTGTTTTACGTGGCCTTACATGCACATTTGTTGGAGGACTGAAAACTGGAATTGTTGGGAGAACTGGAAGTGGTAAATCAACTCTTATACAAGCTCTTTTTCGAATCGTTGAGCCTTCATTTGGGAGAATTATGATTGATGGTATCAACATATCTTCCATTGGACTTTATGATTTGAGGTCAAGATTGAGCATTATTCCTCAAGATCCAACCATGTTTGAAGGCACTGTGAGGAGTAATTTGGATCCATTGGAAGAGTACACAGATGAACAAATTTGGGAGGCACTAGATAAGTGTCAACTTGGAGACGAAGTTAGAAGGAAAGACGGAAGGTTAGACTCAGCAGTGAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGGCAATTGGACTGTCTTAGTAGAGTGCTGCTCAAGAAAAGTAAAGTCTTAGTACTAGATGAAGCTACTGCATCAGTCGACACAGCTACCGATAATTTTATACAACAAACTCTTAGGCAACATTTCTCTGATTGCACGGTAATTACAATTGCACATAGAATAACTTCTGTTATTGACAGTGATATGGTTCTACTACTTAATCAAGGACTAATTGAAGAGTATGATTCTCCAACAAGATTGCTAGAGAACAAGTTTTCCTCTTTTGCTCAACTTGTTGCTGAGTATACAACAAGGTCCAACTTCAGTTTTCATCCACAAAAATAG 735 0.3932 MQVRYAPHLPLVLRGLTCTFVGGLKTGIVGRTGSGKSTLIQALFRIVEPSFGRIMIDGINISSIGLYDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRRKDGRLDSAVSENGENWSMGQRQLDCLSRVLLKKSKVLVLDEATASVDTATDNFIQQTLRQHFSDCTVITIAHRITSVIDSDMVLLLNQGLIEEYDSPTRLLENKFSSFAQLVAEYTTRSNFSFHPQK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01173 244 CDD ABCC_MRP_domain2 2 214 - -
Trre5g01173 244 SMART AAA_5 22 207 IPR003593 GO:0016887
Trre5g01173 244 Pfam ABC transporter 14 161 IPR003439 GO:0005524
Trre5g01173 244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 221 IPR027417 -
Trre5g01173 244 Gene3D - 1 232 IPR027417 -
Trre5g01173 244 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 230 IPR003439 GO:0005524
Trre5g01173 244 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 231 - -
Trre5g01173 244 FunFam ABC transporter C family member 3 1 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01173 Trre-Chr5 8332779 8334107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01173 12 220 Calmodulin-binding Proteins AT2G36910 30.952 4.73e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01173 - K05666 mnt:21399279 419.468