Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01172 ATGTCGTTTGTCTTCTCTTTCCATTTTCTTGCACACAAAGCCATTACTTTTCTTACATTTTTCATCAATGTGAAACCAGTTTTCTTACATGGCTTATCTGGTTTCCTCCATCTACTTCTGTTAGTGGCCCTATTCATGTCATGGTTGTGGAAGAAACTCTCTGTTACAGAATCCAGAGTTAGAATAAAAAACACCCTCTTCAGAAGGACACTTTTTTGTTCTGTTTCTGCTATCAATCTTCTGCTTTGTTTCTTTGATTGCTTCAGTTTGTATAGAAATGGTTTTTCTAAAGAAAAGCTTGTGACCCTTTTAGATTTGGCTCTCAAAACCATTGCTTGGGGTATTGCTTGTGTTTGTCTTGAAAGGAAACTCATCTGTTCATTGTTTTTCAGAACTTGGTGTGCTTTTGAGCTCTTTGTTTCATGTTTTTGCTTTACAGTGGACATTGTTATCCATGAAAAGCAAGCTTCTTTTCCAATTCAATACTTGGTTTCTGATGGTTTCTCTGTTTGTGTAGGGTTACTCATCTGTTACTTGTGTTTTTTTGTGAAGAATGGTGATACAAAAGAAGCCAAAGGGTTTGAAACTGTTACTCCTTACTCAAATGCTGGATTTTTCAGTATTCTTACATTTTCTTGGATTTTCCCACTGATTTCTGTTGGAAAGAACAAAACTTTAGACCTTGAAGATGTTCCTCAACTTGACAGAAGAGATAGTTTATTTGGCGCTTTTCCGAATTTCAAGGATAAGCTTGAGGCATACTGTAGTGGTAATACTAATGACATCAACAAAGTGACCACATTTAAGCTAGTGAAGTCATTAGCATTCACATCATGGAAAGAGATTATTTTGACAGCTATTTTTGCATTTGTAAACACATTGGCTTCTTATGTAGGTCCTTATCTTATAAATGATTTTGTTCAATATCTTAATGGACAAAGAAAATTCGAAAACGAAGGACTTGTTTTGGTGTCTGCATTTTTTGTGGCAAAACTTGTTGAGTGTCTAACAAAGAGGCAATGGTTTTTCAGGTTGCAGCAAGTTGGAATTAGAATCCAAGCACTTCTTGTAACAATCATCTATAATAAAACTTTGACACTTTCATCTCAATCAAGGCAAGGTCACACTAGCGGCGAAATAATCAATTTCATGACTGTCGATGCTGAAAGAGTTGGTGACTTCAGTTATCACTTGCATGATCTTTGGTTGGTAGTTCTACAAATTTTAGTATCTTTGTTTGTTTTATATAAAAATCTCGGCCTCGCATCGATTTCTGGGTTTGTTGCAACTATCATTGTAATGTTGGCAAATGTTCCTTTAGGATCAATCCAAGAGAAGTTTCAAGACAAGTTGATGATGTCAAGGGACAAAAGAATGAAGGCCACATCAGAGATTTTAAGAAACATGAGGATTCTTAAACTACAAGGATGGGAAATGAAGTTTCTGTCTAAGATAACTGAACTCAGAAAGAGTGAGGAATTTTGGTTAAAGAAACTTTTATACACTTTAGCTGTGATCATATCTGTATTTTGGAGTGCACCAGCATTTGTGTCTGCGGTTACTTTTGGTACTTGTTTGCTTATAGGGGTCCCACTTGAATCAGGAAAGATCTTATCTTCACTTGCAACATTTCAGATTCTACAAGAACCAATTTATAATCTTCCAGAAACAATTTCAATGATGGCACAAGCTAAGGTTTCTCTTGACAGAATTGCATCTTTTCTTTGTCGAGAAGACACGAAGTCTGATATTGTTGAGAAGCTTCCAAAGGGTAGTAATAGTTCTGATATAGCAATTGAAATAGTTGATGGAAATTTCTCTTGGGATTTACCTTCTTCAAGTTTAGTATTGAAAAATATAAATCTTAAGATTTTTCACGGAACGAAAGTTGCTATTTGTGGTACTGTTGGATCAGGAAAATCTACTTTACTTTCATGTATATTAGGAGAAGTACCAAAAATATCAGGGGTCATAAAGGTTTGTGGAACAAAGGCCTATGTAGCTCAGTCACCATGGATACAAAGTAGCAAGATAGAGGATAATATATTGTTTGGGAAGGAAATGGAAAGGGAAAGATATGAGAAGATTCTTGAAGTATGCTCACTAAAGAAAGATCTCGATATTTTGTCATTTGGAGATCAAACAATAATAGGGGAGAGGGGAATAAATTTGAGTGGTGGACAGAAACAAAGGATACAGATTGCCCGTGCTTTGTATCAAGATGCCGATATATATCTATTCGATGATCCGTTTAGTGCTTTGGATGCTCATACAGGAACTCACCTGTTTAAGGAATGCTTGTTGGGATTTTTAAGTTCAAAGACCGTGATTTATGTCACGCATCAAGTAGAGTTCTTACCTGCTGCCGACCTTATCTTGGTTATGAAAGATGGAGAAATAACTCAATGTGGAAAGTATAATGATCTACTCAACTCAGGCACTGATTTTATCGAATTAGTTTGTGCTCATAGAGAAGCATTGTCTGCACTTGATTCATCAAATGGAGATACAACAATATCTGATAAAATAAGTACATCACAAGAGTGTCTAGGTGTCTCTCTTTCTCATGAAGTTGACAAAATAGTACAAAATGATGAAATAGATGACAAGTTTGAGGCAAAAGGCCAGCTTGTTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTGTATTGGAAATATATCACAATAGCATATGGAGGAGCTCTTGTACCACTCATATTGATAGCTGAAATCATGTTTCAAATTCTTCAAATTGGAAGCAACTATTGGATGGCTTCATCAACTCCTATTTCGAAAGATGTGAAGCCAACTGTTGGAGGAAGTAAACTCTTAGTTGTCTATGCAGCTTTGGCCATAGGAAGTTCTTTATGTGTCCTAGTTAGAGCAACACTTGTTGTCACAGCTGGTTATAAGACTGCTACTCTACTCTTCAATAAAATGCACCTTTGCATTTTCCATGCTCCAATGTCATTATTTGATGCCACTCCAAGTGGAAGGATCCTTAATAGGGCTTCTACCGACCAAAGTGCAGTGGATATAAACATTCCTTTTCAAACTGCATTAGTTGCTTGTTCTGTGATCCATCTTCTCGGAATTATAGTTGTGATGTGTCAAGTTGCATGGCAGGTTTTCATTGTCTTTGTTCCTATGACAGCAATCTGCATATGGTATCAGAAATATTATATACCATCAGGCCGCGAACTATCTCGTTTAGTCGGAGTATGCAAAGCTCCTGTCATTCAACACTTTGCCGAAACAATTTCAGGTACATCAACTATCAGGAGCTTTGATCAGGTGTCAAGATTTGAAGAAACAAATATGAAACTAACGGATGGATATTCACGCCCCAAATTCAATATTGCTGGTGCTATGGAATGGTTGTGTTTTCGATTAGATATGGTGTCTTCTATCACATTTGCCTTTTGCTTGGTAGTCTTGATAGCGGTTCCACAAGGAGTCATAAATTCAAATGTTGCTGGTTTAGCCGTGACATATGGCCTTAATCTGAATATTATACAAGCATGGATGATATGGGAACTTAGCAACTTAGAGACCAAAATTATATCGGTATAA 3582 0.3649 MSFVFSFHFLAHKAITFLTFFINVKPVFLHGLSGFLHLLLLVALFMSWLWKKLSVTESRVRIKNTLFRRTLFCSVSAINLLLCFFDCFSLYRNGFSKEKLVTLLDLALKTIAWGIACVCLERKLICSLFFRTWCAFELFVSCFCFTVDIVIHEKQASFPIQYLVSDGFSVCVGLLICYLCFFVKNGDTKEAKGFETVTPYSNAGFFSILTFSWIFPLISVGKNKTLDLEDVPQLDRRDSLFGAFPNFKDKLEAYCSGNTNDINKVTTFKLVKSLAFTSWKEIILTAIFAFVNTLASYVGPYLINDFVQYLNGQRKFENEGLVLVSAFFVAKLVECLTKRQWFFRLQQVGIRIQALLVTIIYNKTLTLSSQSRQGHTSGEIINFMTVDAERVGDFSYHLHDLWLVVLQILVSLFVLYKNLGLASISGFVATIIVMLANVPLGSIQEKFQDKLMMSRDKRMKATSEILRNMRILKLQGWEMKFLSKITELRKSEEFWLKKLLYTLAVIISVFWSAPAFVSAVTFGTCLLIGVPLESGKILSSLATFQILQEPIYNLPETISMMAQAKVSLDRIASFLCREDTKSDIVEKLPKGSNSSDIAIEIVDGNFSWDLPSSSLVLKNINLKIFHGTKVAICGTVGSGKSTLLSCILGEVPKISGVIKVCGTKAYVAQSPWIQSSKIEDNILFGKEMERERYEKILEVCSLKKDLDILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSALDAHTGTHLFKECLLGFLSSKTVIYVTHQVEFLPAADLILVMKDGEITQCGKYNDLLNSGTDFIELVCAHREALSALDSSNGDTTISDKISTSQECLGVSLSHEVDKIVQNDEIDDKFEAKGQLVQEEEREKGKVGFSVYWKYITIAYGGALVPLILIAEIMFQILQIGSNYWMASSTPISKDVKPTVGGSKLLVVYAALAIGSSLCVLVRATLVVTAGYKTATLLFNKMHLCIFHAPMSLFDATPSGRILNRASTDQSAVDINIPFQTALVACSVIHLLGIIVVMCQVAWQVFIVFVPMTAICIWYQKYYIPSGRELSRLVGVCKAPVIQHFAETISGTSTIRSFDQVSRFEETNMKLTDGYSRPKFNIAGAMEWLCFRLDMVSSITFAFCLVVLIAVPQGVINSNVAGLAVTYGLNLNIIQAWMIWELSNLETKIISV 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01172 1193 FunFam ABC transporter C family member 10 266 579 - -
Trre5g01172 1193 Pfam ABC transporter 617 751 IPR003439 GO:0005524
Trre5g01172 1193 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 908 1188 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01172 1193 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 283 563 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01172 1193 FunFam ABC transporter C family member 5 869 1193 - -
Trre5g01172 1193 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 822 IPR003439 GO:0005524
Trre5g01172 1193 CDD ABC_6TM_ABCC_D1 284 571 IPR044746 GO:0140359
Trre5g01172 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 820 IPR027417 -
Trre5g01172 1193 Pfam ABC transporter transmembrane region 909 1148 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01172 1193 Pfam ABC transporter transmembrane region 283 550 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g01172 1193 Gene3D ABC transporter type 1, transmembrane domain 258 581 IPR036640 GO:0005524|GO:0016020
Trre5g01172 1193 Gene3D ABC transporter type 1, transmembrane domain 869 1193 IPR036640 GO:0005524|GO:0016020
Trre5g01172 1193 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 200 1193 - -
Trre5g01172 1193 CDD ABC_6TM_ABCC_D2 906 1193 IPR044726 GO:0140359
Trre5g01172 1193 FunFam ABC transporter C family member 5 582 831 - -
Trre5g01172 1193 CDD ABCC_MRP_domain1 599 799 - -
Trre5g01172 1193 SMART AAA_5 626 799 IPR003593 GO:0016887
Trre5g01172 1193 ProSitePatterns ABC transporters family signature. 724 738 IPR017871 GO:0005524|GO:0016887
Trre5g01172 1193 SUPERFAMILY ABC transporter transmembrane region 894 1192 IPR036640 GO:0005524|GO:0016020
Trre5g01172 1193 SUPERFAMILY ABC transporter transmembrane region 273 576 IPR036640 GO:0005524|GO:0016020
Trre5g01172 1193 Gene3D - 597 859 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01172 Trre-Chr5 8328384 8332673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01172 599 853 Calmodulin-binding Proteins AT2G36910 29.286 6.55e-27 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01172 - K05666 gmx:100775358 1756.88