Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01162 ATGGATCTTCAAACAATTTACCCTTTCACCATTTTGTCCATTTTCCTCATCTCAATCATTGTGACACTAAAAATAAAGAAGAAAAATAAGAAAATTGACTCAATTCCAAATTTACCCCCAGGGCCATGGAAGCTACCTATCATAGGAAACATAGCCAATCTTATTGGCTCTCCACCACATAGAAAATTAAGAGATTTGGCAAAAAAATATGGACCTTTAATGCATCTTCAACTTGGTGAACTTTTTATTGTTGTTGTTTCCTCAGCAGAATATGCTAAGGAAATAATGAAAACACATGATGTTATATTTGCATCAAGGCCTCTTACACTAACCTCGGAGATAATATTTTATGAATCGACAGATATAGTTTTTTCACCTTATGGCGAATATTGGAGACAACTTCGAAAGTTTTGTACCGTTGAACTTTTAAGTATAAAACGCGTTCAATCTTTTCGGCCAATAAGAGAACAAGAGATGAATAATCTCGTCAAAAATATTGCTTGCGAAGAAGGAAGTGTCGTAAATCTTTCTCAACAAGTTGTGTCAATGATGTTTTCAATCACTTCAAGGGCAGTATTCGGAAAAAAATACATTGAGCAAGATGAGTTCATATTGGAAGTAAGAGAAGTGATGCAGCTATCCAGTGGTTTCTACATTGGAGACTTGTTTCCTTCGGCGAAATGGCTTCAGAACTTTAGTGGAATGAGGTCTAAGCTTGAGAAGGTGCATCGAAATATTGATAGAATACTCGAGATTATTATCGATGATCATAAAGAAACAAAGTCAAGACCTAATAAAGATTTTTTAGTTGAAGGAGAGGAAGATTTGATTGATGTTCTCTTGAAATTTGAAGAGGGTAGCAGCTGCCATCAGGAACTTTCATTAACTAAAAGAAATATCAAGGCTATACTCTTTGATATCTTCTCAGGTGGAAGTGACACAGCAGCAACTACAATAAACTGGGCAATGGCTGAGATGATGAAGGATCAAAGAGTATTGAAGAAAGCACAAACTGAAGTGAGAATGATATTCGAAAAAACAGGAAAAGTTGATGAAACATGCATTGATGAATTAAAATACTTAAAGGCAATTATCAAAGAGGTTTTAAGAATTCACCCTCCAGCTCCTCTTTTAATTCCAAGGGAGTGTGGACAAGCTTGTGAGATTGATGGATATCACATACCAATAAAAAGTAAGGTAATAATAAACGCTTGGGCGATTGGAATGGATCCAAAAAATTGGACTGAACCAGAGAGGTTTTATCCTGAAAGGTTTATCGATTGTTCTATTGATTATAAAGGAAATAATTTTGAGTACATTCCATTTGGTGCTGGAAGGAGAATGTGTCCGGGTATAAACTACGGTATGGCAAATGTGGAAATGACTCTTGCTTTGTTATTGTGTCATTTTGAATGGAAACTTCCTAATGGAATGAAATGTGATGATTTAGATATGACTGAACTGTTTGGAGCATCTGTTATAAGAAAAGATGACTTGTACATGATTCCAATCACTTATCCTTCATTGAAGTAG 1533 0.3523 MDLQTIYPFTILSIFLISIIVTLKIKKKNKKIDSIPNLPPGPWKLPIIGNIANLIGSPPHRKLRDLAKKYGPLMHLQLGELFIVVVSSAEYAKEIMKTHDVIFASRPLTLTSEIIFYESTDIVFSPYGEYWRQLRKFCTVELLSIKRVQSFRPIREQEMNNLVKNIACEEGSVVNLSQQVVSMMFSITSRAVFGKKYIEQDEFILEVREVMQLSSGFYIGDLFPSAKWLQNFSGMRSKLEKVHRNIDRILEIIIDDHKETKSRPNKDFLVEGEEDLIDVLLKFEEGSSCHQELSLTKRNIKAILFDIFSGGSDTAATTINWAMAEMMKDQRVLKKAQTEVRMIFEKTGKVDETCIDELKYLKAIIKEVLRIHPPAPLLIPRECGQACEIDGYHIPIKSKVIINAWAIGMDPKNWTEPERFYPERFIDCSIDYKGNNFEYIPFGAGRRMCPGINYGMANVEMTLALLLCHFEWKLPNGMKCDDLDMTELFGASVIRKDDLYMIPITYPSLK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01162 510 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Trre5g01162 510 SUPERFAMILY Cytochrome P450 39 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PANTHER OS08G0105600 PROTEIN 62 505 - -
Trre5g01162 510 CDD CYP71-like 69 499 - -
Trre5g01162 510 FunFam Cytochrome P450 71D8 31 503 - -
Trre5g01162 510 Pfam Cytochrome P450 39 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 Gene3D Cytochrome P450 33 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 Coils Coil 509 510 - -
Trre5g01162 510 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 183 201 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre5g01162 510 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01162 Trre-Chr5 8220257 8222122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01162 14 506 Cytochrome P450 AT3G26300 40.400 1.25e-132 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01162 - - gmx:100801936 672.544