Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01140 ATGACTGTAGACGATCGGTGTTTTGTTGAATGGAAAGAGCAATTTGTTTCGCAAGAGCGTGGACATCGTATAGTTCACTATTACTTTAAGGATTCTGCTGGAGAATCATTCCTTGCAGTTATTGGCACCGAGAGGAGTGTTAGACATATGTGCTATGTTATTGCTGAGGAGTTTCTGGAAATTTGTGGATTGGAAATTCCACCTGGTTTCAAATGGAGATCTAGAAGAGAGGTGGTCGATTGGCTAACGTCGATGCTTTCAAAGCAGCATCTGCAGGAAGATAGAAATGTATGGCCTGCTCATAATTTGGCACTAGCTCATGGGATCAGAAATGGCAGTGTCAAAGAAGTTAGTGCAAAAATGGTGGATGACAAGGACATTCCAATGAGTAACTCCAAAGTATCCAATTCAGACATTGCTTGGTCAGGACTTGCATGGACATGTGGCAAACAACTCAAACATTATCCCTCTTTTTGCAGGAATGGCATCCAAATAGGAATTCAATCCTTTGTCTTCGTCATGGGCAATGGAGAGAACCATTATGTTGCTTATTTAGAGGATATGTATGAAGACAAGAGGGGGCAGAAAAAGGTTAAAGTAAGGTGGTTTCACCACAATCAGGAAGTCAAGGGTGCAATTCCCGTACGAAATCCTCACCCTCGGGAAGTTTTCATCACTTCTTATTCACAAGTCATCAGTGCAGAGTGTGTTGATGGACCTGCTACAGTCTTAACTCGTCAACATTATGAAAAATGCACGCCTTATTTTTCTCCCACTTCCAAAGACAGAATACATTTATGCTTTCGGCAATTAAAAGGCAACAAAGTCAAGCCCTTTGACTTAAGTAAACTGCGTGGCTACTATACTCAGCCAGCTCTTTCTTCCTTGCATGTTGATACTATCAACAACACCGAGTCTCAGAGCAACAGCCTCACAGGAGAAGATGATGATTTAGATGTTGGTGATGATACAAAGAGCGGAGATAAGAGGAGTAGAAGTAATGGTCGACAAGGGGTTAGGAAGTTGATTAGAAGTAATCAAATGATGGGATACCAAACCTTTCAGGTTGTAAATTATGCTAGGCCAGATAGGAGATTGCTTTCTTTGAAACAGGTTGAATGTAAACCTTTGTATAACCTGACATGCAAAGTTGATGACAAGATAGAGGTACTCAGTCAGGATAGTGGCATCCGAGGCTGTTGGTTTAGGTGTACAGTTCTACAGGTAGCTCGGAAACAGCTGAAAGTTCAATATGATGATGTTCAGGATGAAGACGGAAGTGGAAATCTTGAGGAGTGGATCCCTGCTTTTAAGTTGGCCAAGCCTGATAAACTTGAGATGAGACAACCTGGTCGATCGACCATCAGGCCAGCTCCACCTAATGAAGAACAAGAAGTGATTGTCGAGGTTGGAACTGCCGTTGATGCATGGTGGAGTGATGGCTGGTGGGAGGGCGTTGTAACTACAATTGACAACTGTGGTGATGACAGTGTTCAAGTCTACTTTCCTGGTGAAAGCTTGCAAGTGACAGTACATAAGAAGGATTTAAGAATATCTAGAGATTGGTTAGGCGGCACTTGGATTAATATAAAGGCAAAGCCTGATATAACCCCAACTATATTAACCACTAATAGCTTTAACACAAACCTCACCATGTCTCCATCTTTGGCTAAAGACGCAGACTCTGTCGGTTTTGCTAATTCATGTCATGAAGTTCCTGCTGGAGAGAAGTCTAATGAACCTGATATTGTTGAAGAGAAACTTGTATGCAATGGTGTTGCTGAAGATAAGGTTTCTTTCGAAGATGATAAACCCCTTTCAGAAAAAAGTACAGATATTGAAGATAATGGTAGTAATAATGATAAGGACAACAATGAGAATGGTGATAACAAGAACGGTAATGAACATATCGATGTTGTGGAAGTGATTGTGACTTCGGGAGCTGACTGTAAAGGTGTAGAACTAATGGATGTGGCTGTGTAA 1983 0.415 MTVDDRCFVEWKEQFVSQERGHRIVHYYFKDSAGESFLAVIGTERSVRHMCYVIAEEFLEICGLEIPPGFKWRSRREVVDWLTSMLSKQHLQEDRNVWPAHNLALAHGIRNGSVKEVSAKMVDDKDIPMSNSKVSNSDIAWSGLAWTCGKQLKHYPSFCRNGIQIGIQSFVFVMGNGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGPATVLTRQHYEKCTPYFSPTSKDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSSLHVDTINNTESQSNSLTGEDDDLDVGDDTKSGDKRSRSNGRQGVRKLIRSNQMMGYQTFQVVNYARPDRRLLSLKQVECKPLYNLTCKVDDKIEVLSQDSGIRGCWFRCTVLQVARKQLKVQYDDVQDEDGSGNLEEWIPAFKLAKPDKLEMRQPGRSTIRPAPPNEEQEVIVEVGTAVDAWWSDGWWEGVVTTIDNCGDDSVQVYFPGESLQVTVHKKDLRISRDWLGGTWINIKAKPDITPTILTTNSFNTNLTMSPSLAKDADSVGFANSCHEVPAGEKSNEPDIVEEKLVCNGVAEDKVSFEDDKPLSEKSTDIEDNGSNNDKDNNENGDNKNGNEHIDVVEVIVTSGADCKGVELMDVAV 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01140 660 ProSiteProfiles BAH domain profile. 163 282 IPR001025 GO:0003682
Trre5g01140 660 MobiDBLite consensus disorder prediction 299 340 - -
Trre5g01140 660 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 382 625 - -
Trre5g01140 660 MobiDBLite consensus disorder prediction 299 314 - -
Trre5g01140 660 SMART BAH_4 163 282 IPR001025 GO:0003682
Trre5g01140 660 MobiDBLite consensus disorder prediction 600 635 - -
Trre5g01140 660 Pfam Agenet domain 385 460 IPR008395 -
Trre5g01140 660 CDD Tudor_Agenet_AtDUF_rpt1_3 383 460 - -
Trre5g01140 660 CDD BAH_plant_1 158 287 - -
Trre5g01140 660 SMART agenet_At_2 380 445 IPR014002 -
Trre5g01140 660 SMART agenet_At_2 466 524 IPR014002 -
Trre5g01140 660 Pfam BAH domain 169 267 IPR001025 GO:0003682
Trre5g01140 660 Gene3D - 131 279 IPR043151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01140 Trre-Chr5 8015162 8018961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01140 392 522 PHD Transcription Factor Family AT5G58610 30.370 2.95e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01140 - - gmx:100306240 938.717