Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01109 ATGAAGCGCAAATATCCCTTCTTTCACAATGGTCAAAAACCAAGCTCAAGTTCTGGTTCATCTCTGTTGTATCAAGGTGCATATGCAAATACAAGAGCTCCAACAACTTTGATGAATCCTAGGAACGATGCCATGCGAAAAAAATACACACTGCCATTCAAAAATGTGACACAAATCATAAGAAGAGGTTTGCCACCAAAGACAAAAATATCTAATGGTGCAAAGGAAATTATTCAAATATGCTCCTCAAAATTCATAAGCTGGATAAACAAAAAAGCCAATGAGTATTGCAAAAGTGAGTCCAAAATGACTGTGGGTGGAGATGAAATATTGTGGGCCATGAATACTTTAGGTTTTAATGACTATTTTGAACCTCTTAACGTTTATCTCGAACATTATCGCTATAGTAATGAGATTGGACCTATGCATCTGGCGGGTGAGATGCATATGTCCAATGTACCAACTTTTGAGATTTCTGATCCCACCTTGCCACCTCCGCCACTAATTGGTGTTGGGTCAGACTCTTCCATGAACCCAAATCCTATTTTTGAAATGGTCGAGGCAATAGATATGGATAAGTTTTGGACTGAAGTGGATAATTTGGATGTTGATTCTTCAGGCACTGCTTCAAGGAACTTTGATCCTTCTCCCAAGGTCAACTTTGATGGCATACGAGAGCGTTGGGAAAATGAATGA 696 0.3908 MKRKYPFFHNGQKPSSSSGSSLLYQGAYANTRAPTTLMNPRNDAMRKKYTLPFKNVTQIIRRGLPPKTKISNGAKEIIQICSSKFISWINKKANEYCKSESKMTVGGDEILWAMNTLGFNDYFEPLNVYLEHYRYSNEIGPMHLAGEMHMSNVPTFEISDPTLPPPPLIGVGSDSSMNPNPIFEMVEAIDMDKFWTEVDNLDVDSSGTASRNFDPSPKVNFDGIRERWENE 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01109 231 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g01109 231 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre5g01109 231 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Trre5g01109 231 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Trre5g01109 231 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Trre5g01109 231 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 50 114 IPR003958 -
Trre5g01109 231 Gene3D Histone, subunit A 40 143 IPR009072 GO:0046982
Trre5g01109 231 MobiDBLite consensus disorder prediction 205 231 - -
Trre5g01109 231 SUPERFAMILY Histone-fold 49 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01109 Trre-Chr5 7805881 7807109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01109 39 134 CCAAT-HAP3 Transcription Factor Family AT2G37060 48.454 1.88e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre5g01109 CBFD_NFYB_HMF 3.5e-13 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01109 K08065 - psat:127084724 154.451