Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01108 ATGTCTCCGAACACGCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTACCAACAACACTCTCATCACAAAACACAACCTTCATCTTCTCTTCATTCACTCTCCGCAACATAACACTCCTCGGCGACTCCTTCCTCCGCCACGGCATCGTCGGTCTAACTCGCTCCACCGCCGTCCCTGCTTCCAGCTCCGGCACTCTCCTTTATAACAACCCCATTTCTCATATACCCAATTCATCTTTCTCTTTCTCTACCAATTTCACTTTCTCTATCACTAACACAAATCCTAACCCTCCTTCTTCTTCACTCAATGGCTTCTCATTTTTCATCAACTCCACAAACTCTTTCATTTCCGTCAATTTTCACACTAACAATAATAACCAAATTGATTTTCATTTCAACAATACTTCAATCCAAAAAATCATTGATTTCAATTTCACAAATGGATACTTGATAACTTCTTGGATTGACCATAAGGTCAGTCCGTTTGATGGTCAGGATAAGAGACAGAATAATTTGAGTGTTTACTTAAGCTATGAAAATTCGAGTTTTACGAAACCCGAAAACCCGGTTTTGAGTTTTAATGTTGATCTTTCTGAGTATTTTAAGGAGATTGAGCTTCTATATGTCGGGTTTTCGGGTTCTGCCGAAGGAAGTACTGAGCTTCAACAGATCATGAATTGGAGCTTTGAATCTTTTCAGTTTCTGATTTTTAATCAAACTCAAAATAAAAATTCAACCTTTCATCATGTGGGTTATCAATATGAAGATATCCCAGCTTCAAATTCCACAAGAAAAAGTCATGGAAAGAGATTTATGATTGGTTTTTATGTTGCTATTGTGGGTCCTGCTTTTTTCTTTGTTCTGCTATTGGTTTTAGGGTATGTTTCATTTAGGAAATGGAGTAGTTTAAAGAAGCTTAAAAAGAATGAAAGTTCTATAGGGTGTCCTAAAGAGTTTGGTTACAAGGAATTGAAGTTTGCTACAAAAGGGTTTCATGGTTCAAGAATAATTGGAAATGGTTCATTTGGGACAGTTTATAAGGCTTTGTTTGTTTCTTCTGGTACAGTTGCTGCTGTTAAAAGATCAAGACATTCACATGAAGGGAAAACCGAGTTTTTATCCGAGTTATCGATTATAGCTGGTTTAAGGCACAAGAATTTGGTTCAACTTTTAGGTTGGTGTGTTGAGAAAGCTTATTTGCATCAAGAATATTTTGATGAAAGGTTTAGTTCTAATCAATATAGTTGCAAGATACAAATTGAACCAAATTGTTAA 1278 0.3654 MSPNTLLFFFFFFFFLLPTTLSSQNTTFIFSSFTLRNITLLGDSFLRHGIVGLTRSTAVPASSSGTLLYNNPISHIPNSSFSFSTNFTFSITNTNPNPPSSSLNGFSFFINSTNSFISVNFHTNNNNQIDFHFNNTSIQKIIDFNFTNGYLITSWIDHKVSPFDGQDKRQNNLSVYLSYENSSFTKPENPVLSFNVDLSEYFKEIELLYVGFSGSAEGSTELQQIMNWSFESFQFLIFNQTQNKNSTFHHVGYQYEDIPASNSTRKSHGKRFMIGFYVAIVGPAFFFVLLLVLGYVSFRKWSSLKKLKKNESSIGCPKEFGYKELKFATKGFHGSRIIGNGSFGTVYKALFVSSGTVAAVKRSRHSHEGKTEFLSELSIIAGLRHKNLVQLLGWCVEKAYLHQEYFDERFSSNQYSCKIQIEPNC 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01108 425 ProSiteProfiles Protein kinase domain profile. 332 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01108 425 Gene3D Phosphorylase Kinase; domain 1 296 404 - -
Trre5g01108 425 PANTHER - 41 398 - -
Trre5g01108 425 Gene3D - 23 233 - -
Trre5g01108 425 Pfam Protein kinase domain 333 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01108 425 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 235 IPR013320 -
Trre5g01108 425 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Trre5g01108 425 SUPERFAMILY Protein kinase-like (PK-like) 316 406 IPR011009 -
Trre5g01108 425 Pfam Legume lectin domain 112 233 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01108 Trre-Chr5 7797199 7799163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01108 6 401 Receptor kinase-like Gene Family AT5G55830 43.722 7.56e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trre5g01108 Lectin_legB 2.8e-12 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01108 - - gmx:100808744 332.028