Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01107 ATGAGACAAAGTTTGCCACCAAAAGCGAAAATCTCTACTAATTCAAAGAACATGATTCAAAAATGTGTCTCAAAGTTCAAGAACATTATAACTAGCAAAGCCAATGAGCATTGTCTAAGAGAGTATAGAAAAGTTGTGAAGGCAGAAGACATATTATGGGCCATGAAGTCCCTAGGCTTTGATGACTATGATAAGGCTTTTACCCATTATCTCAAAAACTATCGAGATAATGGGCATGGGCCTGGGCCTAAGGAACCACCTGTTGAGATTCCTAAGCCCATCCTACCTTCACAACAGGTTGAGGCATATGTTGGGTTGAATACTCCCACAAATCCAAGCCCAATTATTGAAACTTTTGATGCAGTGGACATGGATGAAGCTTGGGCTAACTTGGGTGATTTGGATGTTGTTGGTTCTTTAGACAATGCTGCTTCAACTAGCTTTGATGTTTCAACTTATTTCAACTTTGATGAGTTTGATGAGAGAGATGATTACAAGGTGCAGTGA 507 0.3964 MRQSLPPKAKISTNSKNMIQKCVSKFKNIITSKANEHCLREYRKVVKAEDILWAMKSLGFDDYDKAFTHYLKNYRDNGHGPGPKEPPVEIPKPILPSQQVEAYVGLNTPTNPSPIIETFDAVDMDEAWANLGDLDVVGSLDNAASTSFDVSTYFNFDEFDERDDYKVQ 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01107 168 SUPERFAMILY Histone-fold 1 79 IPR009072 GO:0046982
Trre5g01107 168 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Trre5g01107 168 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Trre5g01107 168 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Trre5g01107 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Trre5g01107 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 78 IPR027113 GO:0001228|GO:0006355|GO:0016602
Trre5g01107 168 Gene3D Histone, subunit A 1 84 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01107 Trre-Chr5 7794663 7795169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01107 1 76 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.579 5.74e-25 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre5g01107 CBFD_NFYB_HMF 3.4e-12 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01107 K08065 - tpra:123912904 258.455