Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01104 ATGAGGGCGAGTGCAATAATCAGTTACTACACCACCGCCTCTAACCGCAACAAGGGTTTTCACCATCGCTTTGGCCACCGTACGAGACAACCAACACCACCATCATTCTGCTCCTCTCTTCACATTCTCCTTCCCTGCTCTGCATTTTCGCGATTGGAGCAACTCTGTCGACGAACTGTAGCGAGTAGCAGCAATAACTTCGGCAAAACTAGGGGATTGTTCAGGAGATATTCTCTACTTGATGAAGAGGAAGGAGGGGAACAACATTTTAGGTACATCAGTGAGCGAATTTCTCAGCAGTTAAAGTCGCGTGAGAAGAATGTGCAGTTTAAATCCTTGAAACGAAGCCGTGATTCCTCTTTAGGTATATGTCAACATTGTGGATACAATGAAAAAAATGTTATGCGTCGTGGCCCAGATGGAAGAAATAATTTATGTAATGCATGCGGGCTCTTTTGGAAGACAAAGGGGAAACTTAGAGATCCCAGGAAAGGACGACGAAAAAATCTTTCTATTGATCAAAGTGATCTGGATCCTCTTATTGATGTCAACATTACTGTTCTTGAAGGAGAATTGTCTGTCATCCAAAACGAACAAGTAGCAGCAATAACTTCGGCAAAACTAGGGGATTGTTCAAGAGATATTCTCTACATGATGAAGAGGAAGGAGGGGAAAAACATTTTGTCGCGTGAGAAGAATGTGCAGTTTAAATCCTTGAAACAAAGCCGTGATTCCTCTTTAGGTATATGTGAACATTGTGGATACAATGAAAAAAATGTTATGCGTCGTGGCCCAGATGGAAGAAATAATTTATGTAATGCATGCGGCCTCTTTTGGAAGACAAAGGGGAGACTTAGAGATCCCAGTAAAGGACGACGAAAAAATCGTTCTATTGATCAAAGTGATCTGGATCCTCTTATTGATGTCAACATTACTGTTCTTGAAGGAGAATTGCCTGTCATCCAAAACGAACAAGTAGCAGCAATAACTTCGGCAAAACTAGGGGATTGTTCAAGAGATATTCTCTACTTGATGAAGAGGAAGGAGGGGAAAAACATTTTGTCGCGTGAGAAGAATGTGCAGTTTAAATCCTTGAAACAAAGCCGTGATTCCTCTTTAGGTATATGTGAACATTGTGGATACAATGAAAAAAATGTTATGCGTCGTGGCCCAGATGGAAGAAATAATTTATGTAATGCATGCGGCCTCTTTTGGAAGACAAAGGGGAAACTTAGAGATCCCAGGAAAGGACGACGAAAAAATCTTTCTATTGATCAAAGTGATCTGGATCCTCTTATTGATGTCAACATTACTGTTCTTGAAGGAGAATTGCCTGTCATCCAAAACGAACAAGTAGCAGCAATAACTTCGGCAAAACTAGGGGATTGTTCAAGAGATATTCTCTACTTGATGAAAAGGAAGGAGGGGAAAAACATTTTGTCGCGTGAGAAGAATGTGCAGTTTAAATCCTTGAAACAAAGCCGTGATTCCTCTCTAGGTATATGTCAACATTGTGGATACAATGAAAAAAATGTTATGCGTCGTGGCCCAGATGGAAGAAATAATTTATGTAATGCATGCGGCCTCTTTTGGAAGACAAAGGGGAGACTTAGAGATCCCAGTAAAGGACGACGAAAAAATCGTTCTATTGATCAAAGTGATCTGGATCCTCTTATTGATGTCAACATTACTGCTCTTGAAGGAGATTTGCTTGTCATCCAAAATGAACAAGGTATTTCTGAAGATCCTTCGAAGGCCATTGCCACTGAAGGTTCGAATAATCATGCATTATACCCCAATGATGAGGAATTGCCTGAATCTTTAGAACACCTAAGAAACACTCTAGGAATCGATCATTCTTTAGAAAATGATGATGAGCAGGAAAAGGGTTGGCTACTACTACCAAAATTTTCTGAACAGGATGTCAAAGATCCATCCTCAGCTGAAAATCCTGAGTCACCAGGAAAGACTGCCACTGAACCTCACAACGAACCTGCATTAGATCCTGGCAAACCCCAGAGTCCGATGAAGAGCTTCACGTTTTCAGAGACTCTGGTGACAATAGAGTCATTGTTGGCATTTCTTGATAAGGAGGTTCCGTCTAGCTCAGAGGTAGACCACACCCCGGTTGTTGGCATTTCTCGATAA 2148 0.4125 MRASAIISYYTTASNRNKGFHHRFGHRTRQPTPPSFCSSLHILLPCSAFSRLEQLCRRTVASSSNNFGKTRGLFRRYSLLDEEEGGEQHFRYISERISQQLKSREKNVQFKSLKRSRDSSLGICQHCGYNEKNVMRRGPDGRNNLCNACGLFWKTKGKLRDPRKGRRKNLSIDQSDLDPLIDVNITVLEGELSVIQNEQVAAITSAKLGDCSRDILYMMKRKEGKNILSREKNVQFKSLKQSRDSSLGICEHCGYNEKNVMRRGPDGRNNLCNACGLFWKTKGRLRDPSKGRRKNRSIDQSDLDPLIDVNITVLEGELPVIQNEQVAAITSAKLGDCSRDILYLMKRKEGKNILSREKNVQFKSLKQSRDSSLGICEHCGYNEKNVMRRGPDGRNNLCNACGLFWKTKGKLRDPRKGRRKNLSIDQSDLDPLIDVNITVLEGELPVIQNEQVAAITSAKLGDCSRDILYLMKRKEGKNILSREKNVQFKSLKQSRDSSLGICQHCGYNEKNVMRRGPDGRNNLCNACGLFWKTKGRLRDPSKGRRKNRSIDQSDLDPLIDVNITALEGDLLVIQNEQGISEDPSKAIATEGSNNHALYPNDEELPESLEHLRNTLGIDHSLENDDEQEKGWLLLPKFSEQDVKDPSSAENPESPGKTATEPHNEPALDPGKPQSPMKSFTFSETLVTIESLLAFLDKEVPSSSEVDHTPVVGISR 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01104 715 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 370 416 - -
Trre5g01104 715 ProSiteProfiles GATA-type zinc finger domain profile. 250 301 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 293 - -
Trre5g01104 715 CDD ZnF_GATA 123 169 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 164 - -
Trre5g01104 715 ProSiteProfiles GATA-type zinc finger domain profile. 502 553 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 496 545 - -
Trre5g01104 715 Pfam GATA zinc finger 376 410 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 Pfam GATA zinc finger 502 536 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 Pfam GATA zinc finger 250 284 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 ProSiteProfiles GATA-type zinc finger domain profile. 124 160 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 PANTHER GATA TRANSCRIPTION FACTOR 28 470 627 IPR045280 GO:0006355
Trre5g01104 715 SMART GATA_3 118 175 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 SMART GATA_3 244 301 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 SMART GATA_3 496 553 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 SMART GATA_3 370 427 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 MobiDBLite consensus disorder prediction 639 678 - -
Trre5g01104 715 CDD ZnF_GATA 249 296 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 CDD ZnF_GATA 375 421 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 CDD ZnF_GATA 501 548 IPR000679 GO:0006355|GO:0043565
Trre5g01104 715 Gene3D - 492 552 IPR013088 GO:0006355|GO:0008270
Trre5g01104 715 Gene3D - 114 172 IPR013088 GO:0006355|GO:0008270
Trre5g01104 715 Gene3D - 366 424 IPR013088 GO:0006355|GO:0008270
Trre5g01104 715 Gene3D - 240 300 IPR013088 GO:0006355|GO:0008270
Trre5g01104 715 ProSiteProfiles GATA-type zinc finger domain profile. 376 412 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01104 Trre-Chr5 7750515 7761973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01104 502 548 Tify Gene Family AT4G24470 55.102 2.16e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre5g01104 GATA 6.5e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01104 - - tpra:123912898 381.719