Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01097 ATGGCGACTTTAGTTGAACCCCCGGAGAGAATTAAGCGAAAGAGAAATCATTGTTATACAATGTGGAAAACATTGTTTGAGATTGATACGAAGTATTGTCCAATTAAGCCTATGGGCCGCGGAGCATATGGCGTGGTGTGCTCATTCGTTAATAAAGAGACCGATGAGAAAGTGGCAATTAAGAAGATTGGCAATGTATTTGATAATCATGTTGATTCATTGAGAACTTTAAGGGAGTTGAAGCTTCTTAGACATGTTCGGCACAAGAATGTGATCACTTTGAAAGATGTTATGATTCCAGTCAAAAGAACAAGTTTTAAGGATGTCTACTTGGTCTATGAACTCATGGATACTGATCTTCATCGTATTATCAAGTCATCTCAGTCACTTTCCAATGATCATTGCAAATTTTTCATGTTTCAGCTACTTGAAGGTCTTAACTATCTCCATTCTGCAAATATTCTTCACCGGGACTTGAAGCCTGCGAATCTGCTTGTCAATGCAAATTGTGATTTGAAGATATGTGACTTCGGACTTGCCCGGACCAGTCAAGTTGATGGCGAAAGTATGACTGAGTATGTTGTCACGCGATGGTATCGTGCTCCAGAGCTTCTATTAGGATGTGACAATTACGGAACCTCCATCGACGTATGGTCCGTAGGATGCATTTTTGCCGAGATTCTTAGTAGAAAGCCGATTTTCCCTGGAAAAGATTCTCTAGACCAAATGAAACTAATTGTAAATGTTCTTGGAAGCCAGCATGAGTCTGATCTTGATTTTATTGATAATCCAAAAGCTAAGGGGTTTATCAAATTACTACCCTATACACAAGGGACACCCTTCTCTCATCTGTACCCACAAGCAGATCCATTAGCCTTAGATTTGTTACAAAAATTGCTTGTGTTTGATCCAACTAGAAGAATTACTGTATTAGAAGCACTTCAACATCCATATATGGCTGATCTGTATGATCCATGGTGTAACCCTTCTGCTCAAGTTCAAGTCAATCTTGACATAGATGAAAATTGGGATGAACAAATGATTAGGGAAATGATGTGGAATGAGATGCTTCATTACCATCCTGAAGCTTCTTCTGTCAATGTATAG 1107 0.3902 MATLVEPPERIKRKRNHCYTMWKTLFEIDTKYCPIKPMGRGAYGVVCSFVNKETDEKVAIKKIGNVFDNHVDSLRTLRELKLLRHVRHKNVITLKDVMIPVKRTSFKDVYLVYELMDTDLHRIIKSSQSLSNDHCKFFMFQLLEGLNYLHSANILHRDLKPANLLVNANCDLKICDFGLARTSQVDGESMTEYVVTRWYRAPELLLGCDNYGTSIDVWSVGCIFAEILSRKPIFPGKDSLDQMKLIVNVLGSQHESDLDFIDNPKAKGFIKLLPYTQGTPFSHLYPQADPLALDLLQKLLVFDPTRRITVLEALQHPYMADLYDPWCNPSAQVQVNLDIDENWDEQMIREMMWNEMLHYHPEASSVNV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01097 368 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Trre5g01097 368 FunFam Mitogen-activated protein kinase 116 345 - -
Trre5g01097 368 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 332 - -
Trre5g01097 368 Pfam Protein kinase domain 35 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01097 368 FunFam Mitogen-activated protein kinase 18 125 - -
Trre5g01097 368 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01097 368 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01097 368 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Trre5g01097 368 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Trre5g01097 368 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Trre5g01097 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01097 Trre-Chr5 7685992 7687207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01097 1 368 MAP Kinase Gene Family AT2G18170 76.630 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Trre5g01097 Pkinase 2.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01097 K20537 - gmx:100783422 607.06