Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01089 ATGGAAATTGGGATAGAGGATGAGATTGTGGACATGTCAATGGTACCTCCATCAAGTATAGTAAGGAATGACTTAGATCACAACAAGGAGTTTATGTCTAAGGATGCATACCTTAGGAATAGGTGCTCAGAGATTGATATTGAAGTTGAAGATTCAAGTTTCAACCAAAATCGCCCCTTACCTATATATTTAAAGTTTGAAGATGTAGAGTTTAAGGTGAGAAATAGCCAAACAGGCTCTAATATGAAGACAATGGTGTCAAAGGCAGCTACACCAAACACTATGGAAGAAGATAGATACAAGAAAATATTGAAGGGTATTACTGGAAGCATTGGCCCTGGTGAAATTCTTGCTCTAATGGGTCCTTCTGGCAGTGGAAAAACAACTTTATTGAGGGTTATAGGAGGAAGATTGCTTGACAATGTAAAAGGAAAAATAACTTACAATGATGTTAAATATACTCCAGCTGTCAAGAGAAGGATTGGTTTTGTGACACAAGATGATATACTTTTCCCACAATTAACAGTGGAAGAAACATTAATCTTTTCAGCATTCTTAAGGTTACCAACAAGTATGAACAAGCAACAAAAATATGCAAGAGTGGAAACAACTCTGAAGGAGCTAGGTCTTGAAAGATGTCGCCACACGAAAATAGGTGGAGGATATCTCAAAGGCATATCAGGAGGGGAAAGGAAAAGAACAAGCATAGGCTATGAAATTCTTGTTGATCCTTCATTGCTGCTACTTGATGAACCAACTTCAGGCCTTGATTCTACATCAGCAAACAAACTACTTGTCACACTTCAAGGACTTGCTAAGGCTGGAAGGACTATAATCACAACAATACATCAGCCATCAAGCAGAATCTTTCACATGTTTGACAAACTTCTTTTGATATCAGAAGGATATCCTATTTACTATGGTACAGCTAGAGAAACAATGGAGTACTTTTCGTCGTTGAGGTTTAGTCCGGAAATAGCCATGAATCCGGCAGAGTTCTTGCTTGATATGGCAACTGGTGAAGTGAATGACATAAGTGTTCCAACAGATATTTTTGATAATCAAGAATCCGCTCATGACTTTGCCAAAGCTGTTATTAAATATCTACAACTCAAGTACAAAACTCTACTGGAGCCAAAAGCGAAAGATAACCTTAGAGGAGTAAACATACCAGAACATCTTCAAGTGGCCATTCAGGTTAAGAAAGAGTGGACATTGAGTTGGTTGGACCAATTTGTGATTCTTTCAAAGCGAACATTTAAAGCAAGATCCAAGGACTATTTGGACAAGTTAAGACTATTTCAAGCAATTGGAGTAGCACTTATGTTGGGGCTACTTTGGTGGAAATCTTCAACCAACACAGAAGCTCAACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCAACATGCATTTTTGGAGCAGTCTATGTGTTTCCATTTGAAAAGTACTACTTAATAAAAGAAAGGAAAGCTGATATGTATAGATTAAGTGTATACTATATATGCAGCACTCTATGTGACATGGTGGCACATGTTTTATATCCAACTTTTTTCTTGATTATTGTCTACTTCATGGCTGGATTTAAGAGGACTGTTGGTTGCTTCTTCCTCACGTTATTTGTTGTTCTACTGATAGCCGTAACAAGTCAAGGTGCAGGAGAATTGTTTGGAGCTGCAGTTATGGATATAAAAAGATCAGGGTTTGTTGCTACTTTGATATTAATGTTATTCCTCCTTACTGGTGGCTACTATGTTCAGCACATACCAAAATTCATGCAATGGTTAAAGTATCTTTCATTCATGTACTATGGTTTTAGATTACTTCTAAAAGTGCAATATTCAGGAGATGAATTATATGATTGTGAAAGTAGAGGAGGGTGTAGGCCTTTACAAAGTTCACCAACATTTGGCACTGTAAATTTGAAAGGTGGCTTAAAAGAAGTTTGGGTTATGGTAGCCATGGCTATATGTTTCCGTTTGTTAGCTTACTTTTGCCTTCGTAGAAGAATTGATGTTTAA 2037 0.3726 MEIGIEDEIVDMSMVPPSSIVRNDLDHNKEFMSKDAYLRNRCSEIDIEVEDSSFNQNRPLPIYLKFEDVEFKVRNSQTGSNMKTMVSKAATPNTMEEDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLLDNVKGKITYNDVKYTPAVKRRIGFVTQDDILFPQLTVEETLIFSAFLRLPTSMNKQQKYARVETTLKELGLERCRHTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLVTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPIYYGTARETMEYFSSLRFSPEIAMNPAEFLLDMATGEVNDISVPTDIFDNQESAHDFAKAVIKYLQLKYKTLLEPKAKDNLRGVNIPEHLQVAIQVKKEWTLSWLDQFVILSKRTFKARSKDYLDKLRLFQAIGVALMLGLLWWKSSTNTEAQLRDQVGLAFYICIFWTSTCIFGAVYVFPFEKYYLIKERKADMYRLSVYYICSTLCDMVAHVLYPTFFLIIVYFMAGFKRTVGCFFLTLFVVLLIAVTSQGAGELFGAAVMDIKRSGFVATLILMLFLLTGGYYVQHIPKFMQWLKYLSFMYYGFRLLLKVQYSGDELYDCESRGGCRPLQSSPTFGTVNLKGGLKEVWVMVAMAICFRLLAYFCLRRRIDV 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01089 678 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 64 326 IPR003439 GO:0005524
Trre5g01089 678 SMART AAA_5 113 304 IPR003593 GO:0016887
Trre5g01089 678 Pfam ABC-2 type transporter 283 344 IPR043926 GO:0140359
Trre5g01089 678 Pfam ABC transporter 104 254 IPR003439 GO:0005524
Trre5g01089 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 318 IPR027417 -
Trre5g01089 678 CDD ABCG_EPDR 61 308 - -
Trre5g01089 678 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 51 668 - -
Trre5g01089 678 FunFam ABC transporter G family member 22 91 320 - -
Trre5g01089 678 Pfam ABC-2 type transporter 411 619 IPR013525 GO:0016020|GO:0140359
Trre5g01089 678 Gene3D - 93 321 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01089 Trre-Chr5 7635052 7639255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01089 74 312 Calmodulin-binding Proteins AT2G36910 28.340 3.00e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01089 K05681 - gmx:100806094 1120.15