Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01086 ATGGTTTCATTTTCTTCAAATTATGCAATAGGAGAAAACAGCATGGTACAAAACATGTCTCAACCACCAACAACTACTACCTTATCATCATCATCATCATCATCATCATCATCATCATCATCATCTCAAGTTGTTCAACCTTCATTTTTGACTAGAATGGCTATGAGAATATCAAGATCAAGATGGTTCACTTTTTTAAGAAGAGTATTTCATTACCAAAATGGACCAAGATCAAATCTTGGTTCTAACCCTTTTAATTCTAGTACTTGGATGATGTTGGAATTGATTGCTTTGTTGGTTCAAATATTAAGCACAACATTTACTTTGACAATTTCAAAGAATGAGAAACCTGTTTGGCCTATGAGGGTGTGGATAGTTGGTTATGATATTGGATGTGTTCTTAATTTGTTGTTACTTTATGGTCGCTATCATCAAATTAATGTCATTCAAGGTGATTTTGATATTGAAAACCAAACAACCAATGAAGAAAACAGTGTATATAGGAGCACACATTTGATGGGCAAATGCAGAAGTTCACTAGAGCTTTTCTTTGCTATATGGTTTGTGATGGGAAATGTTTGGTCATTTGACTCACGTTTTGGAACATTACAACAAGCTCCAAAACTCCAAGTCCTTTGCATAATCCTTCTTGTTTGGAATGCAATTTGTTACTCTTTCCCTTTTCTTCTATTTTTGTTGCTTTGTTGTTGTGTGCCACTCATTAGCACACTCCTTGGTTACAACATGAATATTGGCTCCTCTTCTAAAGGTGCATCTGATGATCAAATCTCACAACTTCTATCTTGGAGATTTAAAGTGGCTCATTCCAACAATTTAGATCTTAACAACGATTCTCAATGTAGTGAAAGATTGATCCGCGAAGAGCCAGAATGTTGCATATGCTTGACCAAGTACAAAGACAAAGAAGAAGTTAGACAATTACCATGTTCCCATATGTTTCATCTAAAATGTGTGGATCAATGGCTGAAAATTATATCATGTTGTCCTCTTTGCAAACAAGGATTACAAAGGTAG 1035 0.3498 MVSFSSNYAIGENSMVQNMSQPPTTTTLSSSSSSSSSSSSSSQVVQPSFLTRMAMRISRSRWFTFLRRVFHYQNGPRSNLGSNPFNSSTWMMLELIALLVQILSTTFTLTISKNEKPVWPMRVWIVGYDIGCVLNLLLLYGRYHQINVIQGDFDIENQTTNEENSVYRSTHLMGKCRSSLELFFAIWFVMGNVWSFDSRFGTLQQAPKLQVLCIILLVWNAICYSFPFLLFLLLCCCVPLISTLLGYNMNIGSSSKGASDDQISQLLSWRFKVAHSNNLDLNNDSQCSERLIREEPECCICLTKYKDKEEVRQLPCSHMFHLKCVDQWLKIISCCPLCKQGLQR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01086 344 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 26 342 - -
Trre5g01086 344 Pfam RING-like zinc finger 297 325 IPR001841 -
Trre5g01086 344 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Trre5g01086 344 MobiDBLite consensus disorder prediction 15 42 - -
Trre5g01086 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 343 IPR013083 -
Trre5g01086 344 SMART ring_2 298 338 IPR001841 -
Trre5g01086 344 SUPERFAMILY RING/U-box 289 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01086 Trre-Chr5 7606361 7608974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01086 49 342 C3H Transcription Factor Family AT4G26580 66.107 5.95e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01086 - - gmx:100818715 521.161