Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01072 ATGCCTGAAATCTTAAGGAATCTCTCACTTTCTCCCACAAATTTCTACTTCACTTTCACCTTCATTATCTTATTAAACACTATTCTTATCTTTCCATTTTGTTACTCTTACTCACTTAATGAACAAGGACAAGCTCTTATAGCATGGAAAAACAGTTTAAACAGTACTTTAGAATCTTTAGATGCATTATCTTCATGGAATTCTTCATCCATAACACCATGCAATTGGTTTGGAGTGTATTGCAATTCACAAGGAGATGTCATAGAGATAAACTTGAAAGCATTGAGCTTACAAGGCTCATTACCTTCAAATTTTCAATCCTTAAAGTCCTTGAAGATTCTCAACCTCTCATCAGCAAACATCACAGGAACGATACCGAAAGAGATTGGAGATTATAAAGAGCTTATCTTTGTTGATCTAAGTGGAAATTCTCTATCTGGTGAAATACCAGAAGAAATTTGTAGGCTAAGTAAACTTCAAAGTTTGTTTCTTCATACAAATTTCTTTGAAGGAAACATTCCATTCAACATTGGAAATTTATCAAGTCTTGTGAATTTGACACTCTATGATAATCATTTGAGTGGTGAAATTCCAAAGAGTATTGGTTTGTTGAACAAGCTTCAAGTGTTTAGAGCTGGTGGAAATAAAAATCTTAAGGGTGAGATTCCATTTGAGATTGGAAACTGCACAAATTTGCTCCTATTAGGCCTTGCAGAAACAAGTATTTCTGGAAGCATTCCTTCTTCAATTCAAATGCTGAAAAGAATCAAAACTATAGCTATTTACACAACTCTATTGTCAGGTTCAATTCCACAAGAGATTGGAAATTGTAGTGAGTTGCAGAATCTGTATTTGTATCAGAACTCTCTCTCAGGTTCAATTCCAACTGAACTTGGAGAACTTAGCAAGCTCAAGAGTCTACTGTTATGGCAGAACAATTTGGTAGGAACTATTCCAGAAGAGATTCGAAGATGCAAAGAGATTCAAGTCATTGACTTATCAGAAAATCTTTTAACAGGTAGTATACCGAAGATTCTCGGCGAGCTTTCAAATCTTCAAGAGCTTCAATTGAGTGTGAATCATCTCTCAGGTATTATACCTCCTGAGATTTCAAATTGTACTTCTTTGACTCAACTTGAAGTTGACAACAATGCTCTATCTGGTGAGATTCCTCATCTTATTGGTAACTTGAGAAGCTTGAATTTGTTCTTTGCATGGCAGAACAAGTTAACAGGAAGAATTCCAGATAGTCTTTCAGATTGCCAAGAGCTTCAGTCACTTGATCTTTCTTACAATAATTTGATCGGTGAAATACCTAAAAATCTATTTAATTTGAGGAATCTTACAAAACTTTTGCTTATTTCCAATGATTTATCAGGCTTTATTCCACCTGATATAGGAAACTGCACAAGCCTTTATAGGCTTAGATTGAATCATAATAGAATATCAGGTAGCATTCCGAATGAGATCGGTAACTTGAAGAGTTTGGATTTTGTTGATATAAGTAGCAATCATCTTGTTGGTGAGATTCCTCCAACACTTTCTGGTTGTCAAAATCTCGAGTTTCTAGACCTTCATTCTAATAGTCTCGCCGGTTCGATTCCAGATACTCTTCCTAAAAGCCTACAGTTAATTGACTTGTCAGACAATAGGCTATCAGGTGAATTGAGTCACACCATTGGTTCATTAGTTGAGTTAAGCAAACTAAACTTAGGAAAGAATCAATTAAGTGGAAGAATCCCATCAGAGATTTTATCTTGTTCTAAGCTACAGCTTCTAGACCTTGGAAGCAATAGTTTCACAGGAGAGATTCCAAAGGAATTGAGTCTAATTCCTTCCCTGGAAATCTCTCTTAATCTTAGCTTCAACCATTTTTCCGGTGAAATACCATCACAATTCTCTAGTCTTAGCAAACTAGGAGTGCTTGATCTCTCACATAACAAACTCTCAGGCAATTTAGATCCTCTCTCTGACCTTCAAAACCTTGTTTCCTTAAATGTTTCATTCAATTCCTTCTCTGGTAAGTTACCTAACACTCCATTCTTCCATAAACTCCCTCTTAGTGATCTTGCCGAAAATGAAGGTCTTTACATTGTTCGAGATGATGCGATTCCTGATAATAGAATTGAAACCAAAGGTCATGAAAAAACAGTTATGAAATCTGTAATGTCCATTCTGTTAAGCACAAGTGCAGTACTCGTTCTTCTCACAATCTATGTCTTGATCCGTTCGCATATAGCGAACAAATCACTCATGGAAAATGAAAGTTGGGAGGTGACTTTGTATCAAAAGTTTGAACTCTCCATTGATGACATTGTATTGAATTTAACATCATCCAATGTGATTGGCACCGGAAGTTCAGGAGTTGTGTACAAGGTAACAGTTCCAAACGGCGAAACACTTGCGGTTAAAAAGATGTGGTCATCAGAAGAGTCAGGAGCATTCAATTCTGAAATTCAAACCTTAGGTTCAATCAGACACAAGAATATCATTAGGCTTCTTGGTTGGGGATCCAACAGAAACCTGAAGCTGCTGTTTTACGACTATCTTCCCAATGGAAGCCTTAGTTCATTACTTCATGGTTCTGGTAAGGGAAAAGCAGAATGGGAAACAAGATATGATGTTATATTAGGTGTGGCTCATGCACTTTCATATTTACATCATGATTGTGTTCCTGCCATAATGCATGGAGATGTCAAAGCCATGAATGTGCTATTAGGCCATGGATATCAACCTTACCTTGCTGACTTTGGCTTAGCGAGAATTGTAGTAGCTGAAAATGACGACAATACAAATTCCAAGCCACTACAAAGACATCATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAACATGCATCAATGCAGCCTATTACTGAGAAGAGTGATGTTTACAGTTATGGTATGGTTCTACTTGAGGTCTTAACAGGAAGGCACCCTTTAGATCCAACTCTTCCAAGGGGTACAAACATGGTTCAATGGGTTAGGAATCATTTATCTAGCAAAGGAGACCCTTCTGAAATTCTTGATACTAAGCTTAGAGGAAGGGCTGACCCTACCATGCATGAAATGCTACAAACTTTAGCAGTGTCATTTCTATGTGTAAGCACAAGAGCCGCTGACCGTCCAGCAATGAAAGATGTCGTTGCAATGCTCAAAGAAATTAAACCTGTTGAGACTTCAAGAGGAGACACTGATGTACTGAAATTAGGAGGTTTAACATCACATAGTTCTCCACCACCTCCTAAGAATGTACTTGCACATGGATCTTCTACTTGTTCCTATAATTTCTCAGATGGTTAA 3306 0.3721 MPEILRNLSLSPTNFYFTFTFIILLNTILIFPFCYSYSLNEQGQALIAWKNSLNSTLESLDALSSWNSSSITPCNWFGVYCNSQGDVIEINLKALSLQGSLPSNFQSLKSLKILNLSSANITGTIPKEIGDYKELIFVDLSGNSLSGEIPEEICRLSKLQSLFLHTNFFEGNIPFNIGNLSSLVNLTLYDNHLSGEIPKSIGLLNKLQVFRAGGNKNLKGEIPFEIGNCTNLLLLGLAETSISGSIPSSIQMLKRIKTIAIYTTLLSGSIPQEIGNCSELQNLYLYQNSLSGSIPTELGELSKLKSLLLWQNNLVGTIPEEIRRCKEIQVIDLSENLLTGSIPKILGELSNLQELQLSVNHLSGIIPPEISNCTSLTQLEVDNNALSGEIPHLIGNLRSLNLFFAWQNKLTGRIPDSLSDCQELQSLDLSYNNLIGEIPKNLFNLRNLTKLLLISNDLSGFIPPDIGNCTSLYRLRLNHNRISGSIPNEIGNLKSLDFVDISSNHLVGEIPPTLSGCQNLEFLDLHSNSLAGSIPDTLPKSLQLIDLSDNRLSGELSHTIGSLVELSKLNLGKNQLSGRIPSEILSCSKLQLLDLGSNSFTGEIPKELSLIPSLEISLNLSFNHFSGEIPSQFSSLSKLGVLDLSHNKLSGNLDPLSDLQNLVSLNVSFNSFSGKLPNTPFFHKLPLSDLAENEGLYIVRDDAIPDNRIETKGHEKTVMKSVMSILLSTSAVLVLLTIYVLIRSHIANKSLMENESWEVTLYQKFELSIDDIVLNLTSSNVIGTGSSGVVYKVTVPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNRNLKLLFYDYLPNGSLSSLLHGSGKGKAEWETRYDVILGVAHALSYLHHDCVPAIMHGDVKAMNVLLGHGYQPYLADFGLARIVVAENDDNTNSKPLQRHHYLAGSYGYMAPEHASMQPITEKSDVYSYGMVLLEVLTGRHPLDPTLPRGTNMVQWVRNHLSSKGDPSEILDTKLRGRADPTMHEMLQTLAVSFLCVSTRAADRPAMKDVVAMLKEIKPVETSRGDTDVLKLGGLTSHSSPPPPKNVLAHGSSTCSYNFSDG 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01072 1101 FunFam Putative LRR receptor-like serine/threonine-protein kinase 617 702 - -
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 256 327 IPR032675 -
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 193 255 IPR032675 -
Trre5g01072 1101 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 745 849 - -
Trre5g01072 1101 SUPERFAMILY Protein kinase-like (PK-like) 772 1053 IPR011009 -
Trre5g01072 1101 SUPERFAMILY RNI-like 89 411 - -
Trre5g01072 1101 Pfam Protein kinase domain 779 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01072 1101 Pfam Leucine rich repeat N-terminal domain 40 82 IPR013210 -
Trre5g01072 1101 MobiDBLite consensus disorder prediction 1064 1088 - -
Trre5g01072 1101 PRINTS Leucine-rich repeat signature 542 555 - -
Trre5g01072 1101 PRINTS Leucine-rich repeat signature 636 649 - -
Trre5g01072 1101 Pfam Leucine Rich Repeat 424 444 IPR001611 GO:0005515
Trre5g01072 1101 ProSiteProfiles Leucine-rich repeat profile. 638 660 IPR001611 GO:0005515
Trre5g01072 1101 Pfam Leucine rich repeat 328 386 IPR001611 GO:0005515
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 328 433 IPR032675 -
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 38 192 IPR032675 -
Trre5g01072 1101 FunFam Leucine-rich receptor-like protein kinase family protein 344 616 - -
Trre5g01072 1101 ProSiteProfiles Leucine-rich repeat profile. 423 446 IPR001611 GO:0005515
Trre5g01072 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672|GO:0006468
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 539 616 IPR032675 -
Trre5g01072 1101 SMART LRR_typ_2 493 517 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 108 132 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 301 325 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 563 587 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 445 469 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 518 541 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 180 204 IPR003591 -
Trre5g01072 1101 SMART LRR_typ_2 349 373 IPR003591 -
Trre5g01072 1101 Gene3D Phosphorylase Kinase; domain 1 741 849 - -
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 434 538 IPR032675 -
Trre5g01072 1101 Gene3D Ribonuclease Inhibitor 617 701 IPR032675 -
Trre5g01072 1101 SMART serkin_6 776 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01072 1101 ProSiteProfiles Protein kinase domain profile. 776 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g01072 1101 Gene3D Transferase(Phosphotransferase) domain 1 850 1069 - -
Trre5g01072 1101 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 500 1054 - -
Trre5g01072 1101 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 850 1071 - -
Trre5g01072 1101 FunFam Predicted protein 200 296 - -
Trre5g01072 1101 ProSitePatterns Protein kinases ATP-binding region signature. 782 805 IPR017441 GO:0005524
Trre5g01072 1101 SUPERFAMILY RNI-like 313 674 - -
Trre5g01072 1101 FunFam Leucine-rich receptor-like protein kinase family protein 39 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01072 Trre-Chr5 7513698 7517319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01072 37 1100 Receptor kinase-like Gene Family AT5G56040 65.888 0.0 1402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre5g01072 Pkinase 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01072 - - psat:127084696 1897.09