Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01071 ATGCCACAGGAGGGGTCCCAAAACTCATTTTTCACATCTCCTTCAAAGAGAGGATTGAAGGGTTTAGTTTCTATGAACATGAAGGAAGCTTCATCCCCTGCCATAGAGGAGAGTTTCAACGATTATGATTTTGCTCATAGGAAAGCTGAAGAAGCAGCTTCAAGGAGATACGAAGCATCAGAATGGTTACGTCAAATGGACAACATTGCATCTTCATTCTTACCACCAAAACCCTCACAACAACAATTCTGTCTCGCACTTCGCAACGGACTCATTCTCTGCAATGTCCTCAACAAAGTTAATCCTGGTGCTGTTGTCAAAGTTGTGGATAATCCTGCACTTGCTGCTACTGCTACTGCTACTGCTACTGTTGAAGGAGCAGCACATTCTGCTATTCAGTATTTTGAGAATATGAGAAATTTTCTTTATGCTGTTAAAGATATGCAACTATTGACTTTTGAAGCTTCTGATTTAGAGAAGGGTGGTTCATCAAATAAAGTTGTGGACTGCATTCTATGTTTGAAAGGATACTATGAATGGAAACTATCTGGTGGAGTTGGTGTGTGGAGGTATGGTGGAACTGTGAGGATTACTTCCTTACCAAAGAGTTCTCCTTCTTCCTCCATAGTTGGCAGTGAAAGTCTTGATGATTCACTTGACGAGTCTGAGTCATCGCAGTATGAACATCTGCTACAATTTCTTCACCTATCTGAAGAGTTCTTGAATGAAGAAACCAAAACTACCAATGTTCTTGTTTACCTTTTTGATCACTTTGGACTCAGACTTCTTCAGGCTTACCTTAGAGAGACCGATGGGATTGATGATCTGCCTCTCAATACAATGGTAATTGATACCTTACTCAGCAAGGTAGTCAAGGATTTCTCGTCTTTGCTTGTTGCACAATGCACTGAGCTTGGACTTTTCCTGAAGAAAATATTAAAAGGGGATATTTGCTGTCTCTCAAAGAGGGAGTTTGTAGAAGCTATATCACTATATCTTAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAATTCTGCAGTTGTGGTGGCAAGCGTGATAGTGTTCGACAAAATGTCAATTACTCTGCCAAATATGGTGAAGTAATCAATACTCAAGAAAAACAACTTGAGAGGATGAAATACTTCTTTGAAGATACAAAACTTGAAGTCAAACAAATTCAATCAGAGTGGGAACAAGAATTTAGTAGGCTAGAGCATCATATTAAGAGCCTTGAAGTGGCCTCCACTTCTTACCACAATGTTTTGGAAGAGAACCGTTTTCTTTACAACCAAGTACAAGACCTCAAAGGAGCAATTAGGGTCTACTGTAGAGTGAGACCCTTCTTACCGGGACAGTCAAATGGACAGTCTACGGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTGAATCCCCTCAAGCAAGGAAAAGATGCAAGAAAGGTGTTTTCATTCAATAAGGTGTTTGGAACAAGTGTAACACAAGAACGAATTTATGCTGACACTCAACCGTTGATCAGGTCTGTTTTAGATGGTTATAACGTATGTGTCTTTGCATATGGACAGACCGGTTCAGGAAAGACCTACACAATGAGCGGCCCGGATCTATCAGCTGAAGAGACATGGGGTGTAAACTATAGGGCTTTACGTGATTTATTTTATATATCAAAGGAAAGAGCAGATTCCATAAAATATGAAGTTTTTGTCCAGATGATTGAAATTTACAATGAACAAGTGAGAGATTTATTAATCAGTGATGGCTCTAACAGAAGATATCCTTTAAATATACGAAACACCTCCCAACTGAATGGCCTCAATGTGCCTGATGCATTTTTAGTTCCAGTTACTTGTACTCGAGATGTTCTACATTTAATGAGAATTGGTCAGAAAAACCGCGCTGTAGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCTCACAGTGTATTGACTGTTCATGTTCGAGGCAGGGAGTTAGTTTCTAACTCCATTCTTCGGGGCTGTCTCCATCTTGTGGATTTGGCTGGTAGTGAGAGAGTTGACAAATCTGAGGCTGTTGGTGAGAGACTAAAGGAGGCCCAACATATAAATAGATCACTTTCAGCACTCGGAGATGTCATTTCTGCTTTGGCACAGAAAAGTTCACATATCCCTTACAGAAATAGCAAGCTCACACAAGTGTTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATAAATCCCGAACTTAATGCTATTGGGGAGACAATTAGCACACTCAAGTTTGCTGAGAGGGTTGCTTCCATTGAACTCGGGGCTGCTCAATCTAATAAAGAAACCGGGGAAATTAGAGAACTGAAGGAAGAGATATCAAGTCTCAAACTGACATTGGAGAGAAAAGAAACAGAGCTAGAGCAGTTGAAAGCTGGGAATGCTCGAAACACTACAGAATCTCCGAAACCAAGAGCTATTTCACCTTATCGTTTGCCTAAATATGGCACCAGTGGAAACACGAAGCCTGAAACTAGTCAACGACTTATGGATGATAGAAACTTTGAGGCTAGAAGTTGTTCTTCGGGTAAGCAAAGAAGGTCAAGGTTTCCCTCAGCATTAATGGACAAGGAGTCCATACCGAAAATGTCCCTTCTCACTGAAGAAAAACTAGCGAGCTCACGGAAAGGAAGATCACCATCACCTCCAGTTAGAAGATCAACATCTACTGATAGAGGGTCAATCATTAAAAGCAAGTTAAAAAATGACACAGCAGAGAATCAACCAGTATTAAAGCATCCATTTCCCGCTCGAGTACCTGCTAACAAATTCCTTGTTACAATGCCAATGGCTTCATCTCTTGAGAATAATGCAAGGTTGCATGTGAATTCACCAGAGCCAGTAAAGCATGAAGAGGAACAATTCAAGCAAGCACTTAGTGCTGTAAGACAAGGCAGTGTTAGAAAAAGCAAGGTTGAAAGTAAGGCTAAGGCAAACCATCATCAACTTTCTCCCTTTAAGCTTCAAAATCCTGATTTGATCCCAACATTTATTTCTGGCATGGAGTTTGTTGGTGAAAAGACTGTGGAGACACCTCCAAAGAGTGATCACTCTGATCCCGAAAATGATCTCAGAATTGTTGAGTCTCTTGTTCATGGTGCTTTAAATCTCAATAAGATACGTCAGAACTTTCCAAAGAATTTTCAGAATCTTGAATCAAGAAAAATAGTGCAAGGAGGAGAGCCTTTATCAGCTAGCAAAGTTGAAAACAAACTTTTGAATGGTTCAGGTAGCAATCATAAAGAAGGAAATAATATATCGATGCCTGAATTTAGAAGGAGCCGATCTACGCCACGCGGAAAGTTTTTTGGTTTATCATGA 3375 0.4006 MPQEGSQNSFFTSPSKRGLKGLVSMNMKEASSPAIEESFNDYDFAHRKAEEAASRRYEASEWLRQMDNIASSFLPPKPSQQQFCLALRNGLILCNVLNKVNPGAVVKVVDNPALAATATATATVEGAAHSAIQYFENMRNFLYAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSLPKSSPSSSIVGSESLDDSLDESESSQYEHLLQFLHLSEEFLNEETKTTNVLVYLFDHFGLRLLQAYLRETDGIDDLPLNTMVIDTLLSKVVKDFSSLLVAQCTELGLFLKKILKGDICCLSKREFVEAISLYLNQRSSLASNDFSKFCSCGGKRDSVRQNVNYSAKYGEVINTQEKQLERMKYFFEDTKLEVKQIQSEWEQEFSRLEHHIKSLEVASTSYHNVLEENRFLYNQVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIVNPLKQGKDARKVFSFNKVFGTSVTQERIYADTQPLIRSVLDGYNVCVFAYGQTGSGKTYTMSGPDLSAEETWGVNYRALRDLFYISKERADSIKYEVFVQMIEIYNEQVRDLLISDGSNRRYPLNIRNTSQLNGLNVPDAFLVPVTCTRDVLHLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSSHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVASIELGAAQSNKETGEIRELKEEISSLKLTLERKETELEQLKAGNARNTTESPKPRAISPYRLPKYGTSGNTKPETSQRLMDDRNFEARSCSSGKQRRSRFPSALMDKESIPKMSLLTEEKLASSRKGRSPSPPVRRSTSTDRGSIIKSKLKNDTAENQPVLKHPFPARVPANKFLVTMPMASSLENNARLHVNSPEPVKHEEEQFKQALSAVRQGSVRKSKVESKAKANHHQLSPFKLQNPDLIPTFISGMEFVGEKTVETPPKSDHSDPENDLRIVESLVHGALNLNKIRQNFPKNFQNLESRKIVQGGEPLSASKVENKLLNGSGSNHKEGNNISMPEFRRSRSTPRGKFFGLS 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01071 1124 SUPERFAMILY Calponin-homology domain, CH-domain 47 207 IPR036872 -
Trre5g01071 1124 PANTHER KINESIN-LIKE PROTEIN KLP-3 60 955 IPR027640 GO:0003777|GO:0007018
Trre5g01071 1124 SMART kinesin_4 438 778 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 MobiDBLite consensus disorder prediction 1089 1124 - -
Trre5g01071 1124 FunFam kinesin-like protein KIN-14F 45 179 - -
Trre5g01071 1124 Gene3D - 44 179 IPR036872 -
Trre5g01071 1124 Gene3D Kinesin motor domain 383 772 IPR036961 -
Trre5g01071 1124 ProSiteProfiles Kinesin motor domain profile. 440 770 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 FunFam kinesin-like protein KIN-14F 435 811 - -
Trre5g01071 1124 Coils Coil 777 818 - -
Trre5g01071 1124 MobiDBLite consensus disorder prediction 898 923 - -
Trre5g01071 1124 CDD CH_AtKIN14-like 55 175 - -
Trre5g01071 1124 PRINTS Kinesin heavy chain signature 515 536 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 PRINTS Kinesin heavy chain signature 671 689 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 PRINTS Kinesin heavy chain signature 640 657 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 PRINTS Kinesin heavy chain signature 720 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 MobiDBLite consensus disorder prediction 1089 1110 - -
Trre5g01071 1124 SMART ch_5 55 177 IPR001715 GO:0005515
Trre5g01071 1124 MobiDBLite consensus disorder prediction 844 861 - -
Trre5g01071 1124 Pfam Calponin homology (CH) domain 56 179 IPR001715 GO:0005515
Trre5g01071 1124 Pfam Kinesin motor domain 446 770 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre5g01071 1124 ProSiteProfiles Calponin homology (CH) domain profile. 53 179 IPR001715 GO:0005515
Trre5g01071 1124 MobiDBLite consensus disorder prediction 806 932 - -
Trre5g01071 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 807 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01071 Trre-Chr5 7500756 7510240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01071 431 770 Calmodulin-binding Proteins AT5G65930 42.899 1.87e-74 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01071 K10406 - gmx:100786466 1805.03