Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01059 ATGACGGCAACACTCACTCTCGCCGGTCTCTCCGCCGTCCAACCACTCCGATTCACCGAAAACTGTTCCACCTCCACCTCAGCAAGGTTTATCCAGAAACCAACTTCCAATTGCTCAAGTCGCCGCCGGATTTCAATCCGAGCAGCAACGGCGGTAGTCGAGACACGACGGCCGGCGATAAGTCTCTACGAAGTTCTACGTTTAAAGCCTGGTGCATCTCCTATTGAGATTAAATCGGCTTACCGGAGTCTTGCGAAGGTTTACCACCCCGACGCGGCGGCGAAGCGGTTGCCGGAGTGTGGTGACGGGGACTTCATCGAGATTCGTAACGCTTATGAGACGCTTTCTGATCCCTCTGCGAGAGCGATTTACGATATGTCACTGATGGCGTCACACGGCGGAAGAAGCCGGCGGTTTACGGCAGCTCCGGTGACACAGAAACGGCATTCTGGATATTATAGTAATCGGAGATGGGAAACGGACCAATGTTGGTAG 495 0.5394 MTATLTLAGLSAVQPLRFTENCSTSTSARFIQKPTSNCSSRRRISIRAATAVVETRRPAISLYEVLRLKPGASPIEIKSAYRSLAKVYHPDAAAKRLPECGDGDFIEIRNAYETLSDPSARAIYDMSLMASHGGRSRRFTAAPVTQKRHSGYYSNRRWETDQCW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01059 164 SMART dnaj_3 60 120 IPR001623 -
Trre5g01059 164 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Trre5g01059 164 Gene3D DnaJ domain 48 146 IPR036869 -
Trre5g01059 164 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 10 164 - -
Trre5g01059 164 Pfam DnaJ domain 62 125 IPR001623 -
Trre5g01059 164 PRINTS DnaJ domain signature 100 120 IPR001623 -
Trre5g01059 164 PRINTS DnaJ domain signature 63 81 IPR001623 -
Trre5g01059 164 PRINTS DnaJ domain signature 81 96 IPR001623 -
Trre5g01059 164 ProSiteProfiles dnaJ domain profile. 61 128 IPR001623 -
Trre5g01059 164 CDD DnaJ 63 117 IPR001623 -
Trre5g01059 164 SUPERFAMILY Chaperone J-domain 58 134 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01059 Trre-Chr5 7401493 7401987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01059 63 125 C2H2 Transcription Factor Family AT1G74250 48.485 1.46e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01059 - - tpra:123912861 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g01059 5 7401493 7401987 Trre5g01059 5 7401493 7401987 ECH