Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01053 ATGGCTAGAACAAATTCTACCAAGCTCCCCATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAGGAGACATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGCCTCCTGATGGCACTAAATGGAAAGTGCATTGGAAAAAAATCAAAGGAACTTCCAAGTTTGATGTACTCATACTTGGCCAGAATGCAGTAGAAATAGACTATGATCCTTCATCTGACACAGATGATGATAAAAATGACAATGTTGGTGATAGTGATGATGAATCAGTTCAGATTTTGGACGAAAAGAACAATAGTATTGATCATAGTGATGATGAATCAGTTGAGATTTTGGATGAATGGCTTAAACGGAAGAAGAATAGACAAAGATCGGCATTAGGTTCTCCTCGGCCACATAAGAAAGTTAGAGGTGAGACTGAGAACACTACTAAAAGAACTTCATCCTTGAATTGGCCAACTGTACCTAAAGCTCAGGAAGTAGCTACAAAATTCATCTCAAGCAATCCTTTTTTCACAATTCTTATAAAGCCTTATCATGTGGTAGAAGGTCAGCTGGGTGTACCAAGTTTAGAAGGGGTTATTGAGAACAAAGACAAGTATGTGATGCTGCAGATTGAAAAAAGATCATGGAATGTGAAACTACTCCGTTGTTACGAAGATGGTAGAAGTGGCCGTCGTTTTTCGGCGGGTTGGCCGATGTTTGCAAGTGAAAGTGGACTGCAACCAGGAGATATTTGTGTCTTTGAACTGATAAACAAAAAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 828 0.3792 MARTNSTKLPIRFFKIILQTNLQRLKIPNKFTRRHGVGLSNPVLIKPPDGTKWKVHWKKIKGTSKFDVLILGQNAVEIDYDPSSDTDDDKNDNVGDSDDESVQILDEKNNSIDHSDDESVEILDEWLKRKKNRQRSALGSPRPHKKVRGETENTTKRTSSLNWPTVPKAQEVATKFISSNPFFTILIKPYHVVEGQLGVPSLEGVIENKDKYVMLQIEKRSWNVKLLRCYEDGRSGRRFSAGWPMFASESGLQPGDICVFELINKKDLVFKVHVF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01053 275 MobiDBLite consensus disorder prediction 79 116 - -
Trre5g01053 275 PANTHER B3 DOMAIN-CONTAINING 61 274 - -
Trre5g01053 275 MobiDBLite consensus disorder prediction 133 161 - -
Trre5g01053 275 Pfam B3 DNA binding domain 182 275 IPR003340 GO:0003677
Trre5g01053 275 MobiDBLite consensus disorder prediction 81 95 - -
Trre5g01053 275 SUPERFAMILY DNA-binding pseudobarrel domain 178 275 IPR015300 -
Trre5g01053 275 MobiDBLite consensus disorder prediction 101 116 - -
Trre5g01053 275 CDD B3_DNA 182 275 IPR003340 GO:0003677
Trre5g01053 275 Gene3D - 6 73 IPR015300 -
Trre5g01053 275 SMART B3_2 182 273 IPR003340 GO:0003677
Trre5g01053 275 ProSiteProfiles B3 DNA-binding domain profile. 182 275 IPR003340 GO:0003677
Trre5g01053 275 Gene3D - 166 275 IPR015300 -
Trre5g01053 275 SUPERFAMILY DNA-binding pseudobarrel domain 12 80 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01053 Trre-Chr5 7322546 7324119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01053 9 275 B3 DNA Binding Superfamily AT3G18990 23.894 3.35e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g01053 B3 1.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01053 - - tpra:123887513 349.747