Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01052 ATGGCTAGGACAAATGCTACTCTTTCCATCCGTTTCTTCAAGATCATCCTTCAAACAAATCTTCAAAGACTTAAAATACCAAATAAGTTTACGAAGAGACATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAACCTCCTGATGGCACTAATTGGAAAGTTTATTGGAAAAAAATCAATGGAACTTCCAAGTTCGATGTACTCATACTTGGCCAAAATGCAGTAGAAATAGACTATGATTCTTCATCTGACACTGATGATGATGATGATGAAAATAACAATGTTGGTGATAGTGATGATGAATCAGTTGAGGTTTTGGATGAACGGCTTAAAGGGAAGAAGAACAGACAAAGGTCACCAATAGGTCAATCTCCTCGACCACATAAGAAAGTTAAAGTTGAGGCTGAGAACACCACTAAAAGAACTTTATCCTTGAATTGGCCAAAGGATGCTAAAGCTCGGAAAGTAACTGCAAAATTCAACTCTAGCAATCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGATAAAAAGCCAGCTACGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGACAAGTATGTGAAGCTGCAGATTGGAAAAAGATCATGGAATGTGAAATTGCTTCATTTTACTGATAATAACAATGGTCGACGCCTTTCGGCGGGTTGGCACTTATTTGCAAGTAAAATTGGACTGCAACCAGGAGATGTTTGTATCTTTGAACTGATAAACAAGAAAAATTTAGTTTTTAAAGTTCATGTTTCATAA 777 0.3629 MARTNATLSIRFFKIILQTNLQRLKIPNKFTKRHGVGLSNPVLIKPPDGTNWKVYWKKINGTSKFDVLILGQNAVEIDYDSSSDTDDDDDENNNVGDSDDESVEVLDERLKGKKNRQRSPIGQSPRPHKKVKVEAENTTKRTLSLNWPKDAKARKVTAKFNSSNPFFTILIKPYHLIKSQLRVPSLKGVIENKDKYVKLQIGKRSWNVKLLHFTDNNNGRRLSAGWHLFASKIGLQPGDVCIFELINKKNLVFKVHVS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01052 258 Pfam B3 DNA binding domain 166 255 IPR003340 GO:0003677
Trre5g01052 258 MobiDBLite consensus disorder prediction 80 103 - -
Trre5g01052 258 PANTHER B3 DOMAIN-CONTAINING 61 255 - -
Trre5g01052 258 Gene3D - 5 72 IPR015300 -
Trre5g01052 258 SMART B3_2 166 256 IPR003340 GO:0003677
Trre5g01052 258 MobiDBLite consensus disorder prediction 80 139 - -
Trre5g01052 258 Gene3D - 128 258 IPR015300 -
Trre5g01052 258 SUPERFAMILY DNA-binding pseudobarrel domain 160 257 IPR015300 -
Trre5g01052 258 ProSiteProfiles B3 DNA-binding domain profile. 166 258 IPR003340 GO:0003677
Trre5g01052 258 SUPERFAMILY DNA-binding pseudobarrel domain 11 79 IPR015300 -
Trre5g01052 258 CDD B3_DNA 166 257 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01052 Trre-Chr5 7312368 7314036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01052 12 255 B3 DNA Binding Superfamily AT3G18990 23.565 2.23e-17 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g01052 B3 1.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01052 - - tpra:123887513 311.997