Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g01048 ATGGCTCGGAGAAATGCTACCTTACCAATCCGTTTCTTCAAGATCATCCTCCAAACTAATCTTCAAAGACTTAAAATACCAAATAAGTTTACAAAGAGTCATGGAGTTGGTCTATCAAATCCAGTGTTGATCAAGTCTCCTGATGGCATTAAATGGAAAGTTTATTGGGAAAAAATCAATGGGACTTCAAAATTCCATGTACTCATACTTGGCCAGAACGCAGTGGAAATAGACTATGGCCCTTCATGTCACACTTATGATGATGAAAATAAAAATATTGATCATAGTGACGATGAATCGGTCGAGATTTTGGATGAAAAGGACAATGTTGATCATAGTGATGATGAATCAGTTATGATTTTGGATGAATTAAGTTCTCCTCGACCACATAAGAAAGTTAGAGGTGAGACCGAAAACACTACTAAGAGAACTTCATCCTTGAATTGGCCAAAGGAAGCTAAAGCTCAGAAAGCAACTTCAAAATTCAACTCATGCAATCCTTTTTTCACAATTCTCATAAAGCCTTATCATCTGGTAAACTATCTGTTGCATGGTGTACCAAGTTTAAAAGGGGTTATTGAGAACAAAGAGAAGTATGTGAAGCTGCAGATTGAAAAAAGATCATGGAATGTGAAATTGCTCCCTTGTCACGGAAATAACAATGGTCGGCAACTTTCGGCGGGTTGGCACTTGTTTGCAAGTGAAAATGGACTGCAACCAGGAAATGTTTGTATCTTTGAACTCATAAACAAGAAAGATTTAGTTTTTAAAGTTCATGTTTTCTAA 786 0.3664 MARRNATLPIRFFKIILQTNLQRLKIPNKFTKSHGVGLSNPVLIKSPDGIKWKVYWEKINGTSKFHVLILGQNAVEIDYGPSCHTYDDENKNIDHSDDESVEILDEKDNVDHSDDESVMILDELSSPRPHKKVRGETENTTKRTSSLNWPKEAKAQKATSKFNSCNPFFTILIKPYHLVNYLLHGVPSLKGVIENKEKYVKLQIEKRSWNVKLLPCHGNNNGRQLSAGWHLFASENGLQPGNVCIFELINKKDLVFKVHVF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g01048 261 PANTHER B3 DOMAIN-CONTAINING 61 260 - -
Trre5g01048 261 Gene3D - 149 261 IPR015300 -
Trre5g01048 261 CDD B3_DNA 207 261 IPR003340 GO:0003677
Trre5g01048 261 SUPERFAMILY DNA-binding pseudobarrel domain 162 261 IPR015300 -
Trre5g01048 261 Pfam B3 DNA binding domain 196 261 IPR003340 GO:0003677
Trre5g01048 261 ProSiteProfiles B3 DNA-binding domain profile. 207 261 IPR003340 GO:0003677
Trre5g01048 261 SMART B3_2 168 259 IPR003340 GO:0003677
Trre5g01048 261 SMART B3_2 12 96 IPR003340 GO:0003677
Trre5g01048 261 MobiDBLite consensus disorder prediction 128 151 - -
Trre5g01048 261 Gene3D - 7 73 IPR015300 -
Trre5g01048 261 SUPERFAMILY DNA-binding pseudobarrel domain 11 79 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g01048 Trre-Chr5 7290433 7291925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g01048 8 261 B3 DNA Binding Superfamily AT3G18990 23.077 6.44e-18 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g01048 B3 5.1e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g01048 - - tpra:123887513 356.681